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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacgttttgtgcaattctcactgtcggtactgaaaccaaacttttcagGAGCACCTATTTATCGTCTGTGAGCTACTACGAGCTAATCTGTACGAGTTTCACAAGTACAACCGAGATTCGGGAGGGGAGGTCTATTTCACGATGCCTA

Basic information

species Selaginella moellendorffii
transcript EFJ29918
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29918 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S381_39V6.1 (Physcomitrella patens), 3'ss of exon 11
--------------------------------------------------------------------------------------------------------------------------------gtaagacgttttgtgcaattctcactg--------tcggtactgaaaccaaacttttcagGAGCACCTATTTATCGTCTGTGAGCTACTACGAGCTAATCTGTACGAGTTTCACAAGTACAACCGAGATTCGGGAGGGGAGGTCTATTTCACGATGCCTA
                                                                                                                                |||   | ||   |    ||   |  |        |   || ||          ||  |||||||||| || ||||| |||||| |||| |||||||| || ||||||||||| || |||||| |||| || || || ||||| || || ||||||||  
gtaattagggtggcctttttgttgcatgtctttgagccatgcggacttctctgtactgtagaaagtgaatgtacacctacgtatagctgtgtgcgtgcgagtttgtggaggcgcgcaagcgagtgtgtgtacacctttgcctttggtttatataggtaagcgctaaatattggtggtggtgattgtagGAGCACCTGTTCATCGTTTGTGAGTTACTTCGAGCTAACCTATACGAGTTTCATAAATACAACAGAGAATCAGGTGGCGAGGTGTACTTTACGATGCCCC

upper sequence: EFJ29918 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S47_312V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------------------------------------------------------gtaagacgttttgtgcaattctcactgtc--------ggtactgaaaccaaacttttcagGAGCACCTATTTATCGTCTGTGAGCTACTACGAGCTAATCTGTACGAGTTTCACAAGTACAACCGAGATTCGGGAGGGGAGGTCTATTTCACGATGCCTA
                                                                  ||  |   |||  | |   ||  |||| |        | || ||          |||||||||||  | || || || |||||| |||| ||||||||| |||||||||| ||||| |||||| |||| || || || ||||| || || ||||||||  
gtaatcacagtggcttttgtgctacatgttgatgaatcatacgaactacgttatactgcagcatatgtgtgctttttctttctcctcgtactgactaaggctagatattggtggtggcgatttcagGAGCATTTGTTCATAGTTTGTGAGTTACTTCGAGCTAATTTGTACGAGTTCCACAAATACAACAGAGAATCAGGTGGTGAGGTGTACTTTACGATGCCCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagacgttttgtgcaattctcactgtcggtactgaaaccaaacttttcagGAGCACCTATTTATCGTCTGTGAGCTACTACGAGCTAATCTGTACGAGTTTCACAAGTACAACCGAGATTCGGGAGGGGAGGTCTATTTCACGATGCCTA
                     ttctcac  putative branch site (score: 2)
                                               cttttc  putative PPT
                                            aaactttt  TA-rich tract