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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtcctctgttggaaatttttttcttccctccttaaagagaaatgcttactttgtttcaggagctgcgaaagctggaagcacaagctgcgcgaggtaagctgtccagatttattatgtcttggatgataaacaagTTTATGCAGCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACG

Basic information

species Selaginella moellendorffii
transcript EFJ29726
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29726 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G100809_T01 (Zea mays), 3'ss of exon 4
gtagtcctctgttggaaatttttttcttccctccttaaagagaaatgcttactttgtttcaggagctgcgaaagctggaagcacaagctgcgcgaggtaagctgtccagatttattatgtcttggatgataaacaagTTTATGCAGCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACG---------
                                        ||||    ||   ||| |   || | |   | | |  ||||   ||    ||   | ||     | |    || |    |      |  ||       |  | ||||||| ||  |  |||| ||||| || |||||||||||||||||  |||||| ||||||||||  |   || || ||  | ||||| ||| |         
----------------------------------------agaatcagttggattggt---ggtggtaaaacaccctgaag---aaatctcggttgctatatatttcgagcttgtgcactaacctttattatcttctatctttcagCTGGCATTGTGATAGAAGAGAAAAATTGGCCTCCCTTTTTCCCCCTCATCCACCATGACATTTCTAATGAGATACCTATCCATCTACAAAGGATGCAATA

upper sequence: EFJ29726 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G174730_T01 (Zea mays), 3'ss of exon 4
gtagtcctctgttggaaatttttttcttccctccttaaagagaaatgcttactttgtttcaggagctgcgaaagctggaagcacaagctgcgcgaggtaagctgtccagatttattatgtcttggatgataaacaagTTTATGCAGCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACG---------
                                    | ||||   ||  |||  |    |   |    |  |||    ||  |   | ||       ||   | |     |||    |  | |   | ||     | |||   |||||||  |  |  |||| ||||| ||||||||||||||||||||  |||||| ||| ||||||      || || ||  | ||||| ||| |         
-----------------------------------catagagggttggataccctaaccctaaacaccctgaag----aaatatgggttgtt----atatatttttagtttttccactaacctttgtcatcttttatttt---cagCTGGCGTTGTGATAGAAGAGAAAAACTGGCCTCCCTTTTTCCCCCTCATCCACCACGACATTTCCAATGAAATACCTATCCATCTACAAAGGATGCAGTA

upper sequence: EFJ29726 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA07G31090.1 (Glycine max), 3'ss of exon 5
gtagtcctctgttggaaatttttttcttccctccttaaagagaaatgcttactttgtttcaggagctgcgaaagc--tggaagcacaagctgcgcgaggtaagctgtccagatttattatgtcttggatg-ataaacaagTT--TATGCAGCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACG---------
                                            ||| |     ||   |   | ||    | |   |||||  | |   ||| | |  |     || | | |||  ||  ||| | | | ||  |||  ||  | ||||||||||||  |||| ||||||||||| ||||| || |||||||| || ||||  |||||||||  |   || |||||| | |||||||||           
--------------------------------------------atgatagtactgc--cgaaatctatagatgtcttggaattata---tgcactaatttta--gttctgctttggtacttctagtaggtatttacattttgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCATCATGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaagctgcgcgaggtaagctgtccagatttattatgtcttggatgataaacaagTTTATGCAGCTGGAATCTTTCTAGAGGAGAAGAACTGGCCTCCCTTTTTCCCGATCATCCGCCATGACATTCGTCGCGACATTCCATTGCATCTTCAACG
                           atttattatgtctt  TA-rich tract