1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagattcgtggcttttttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctagGGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGGAACTCGCGAAAAAAGTGAACGATCTATGCG
species | Selaginella moellendorffii |
transcript | EFJ29161 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCGCCGCTCGACGAGGACGACATCGCGCTACTCAAGACTTAT GGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGEST: gi|169115912|gb|FE518094.1|FE518094
genomic: CCCGCCGCTCGACGAGGACGACATCGCGCTGCTCAAGACTTATgtaagattcg ... gcgtttctagGGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTACTCAAGACTTAT GGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGEST: gi|169076506|gb|FE486069.1|FE486069
genomic: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTGCTCAAGACTTATgtaagattcg ... gcgtttctagGGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTACTCAAGACTTAT GGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGEST: gi|169080422|gb|FE488438.1|FE488438
genomic: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTGCTCAAGACTTATgtaagattcg ... gcgtttctagGGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
EST: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTACTCAAGACTTAT GGTCTTGGCCCATACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
genomic: AGAATCCCCCGCCGCTCGACGAGGACGACATCGCGCTGCTCAAGACTTATgtaagattcg ... gcgtttctagGGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAG
gtggcttttttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctagGGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGGAACTCGCGAAAAAAGTGAACGATCTATGCG
cgtttct CT-rich tract
tttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattcgtggcttttttcgtttctagctcgttcttgtgtgtgatttgcgctgcgtttctagGGTCTTGGCCCCTACGCTACCTCCACGAAAAAGGTCGAGAAGGAGATCAAGGAACTCGCGAAAAAAGTGAACGATCTATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA