1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagcgtagcttctgggcacaggaatctcacttttccttacaatcttccttttgtgttttctttttttttttcctgtctttacagGACATGTGAATCACTCGATCTTCTGGAAGAACCTGGCGCCCTCAAAA
species | Selaginella moellendorffii |
transcript | EFJ28961 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCCGAGGCAATCGTCAAGCTCCAGGGTGCTATCAATTTCAATGGAGGAG GACATGTGAATCACTCGATCTTCTGGAAGAACCTGGCGCCCTCAAAAEST: gi|169050436|gb|FE458854.1|FE458854
genomic: TGCCGAGGCAATCGTCAAGCTCCAGGGTGCTATCAATTTCAATGGAGGAGgtaagcgtag ... gtctttacagGACATGTGAATCACTCGATCTTCTGGAAGAACCTGGCGCCCTCAAAA
EST: TGCCGAGGCAATCGTCAAGCTCCAGGGTGCTATCAATTTCAATGGAGGAG GACATGTGAATCACTCGATCTTCTGGAAGAACCTGGCGCCCTCAAAA
genomic: TGCCGAGGCAATCGTCAAGCTCCAGGGTGCTATCAATTTCAATGGAGGAGgtaagcgtag ... gtctttacagGACATGTGAATCACTCGATCTTCTGGAAGAACCTGGCGCCCTCAAAA
cttttccttacaatcttccttttgtgttttctttttttttttcctgtctttacagGACATGTGAATCACTCGATCTTCTGGAAGAACCTGGCGCCCTCAAAA
tccttac putative branch site (score: 40)
tcttccttttgtgttt putative PPT
ttttgtgttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtagcttctgggcacaggaatctcacttttccttacaatcttccttttgtgttttctttttttttttcctgtctttacagGACATGTGAATCACTCGATCTTCTGGAAGAACCTGGCGCCCTCAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC