1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtagaatttatttcttatctgtagtgtcgtgtttttcaaattgcttcgttctctattgttcttttttattttttctttgctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTCAATTCGACCAGGCTCGTCGTGAAACCAGACATGCTGTTTGGCAAGCGTG
species | Selaginella moellendorffii |
transcript | EFJ27687 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTCEST: gi|169067518|gb|FE475260.1|FE475260
genomic: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
EST: AGCACCTCAAGCGATTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGATACCGATTTCGACGCCTTGGCTGACAAGGAACCATGGCTCEST: gi|169071278|gb|FE478410.1|FE478410
genomic: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
EST: ATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTCEST: gi|169044047|gb|FE451633.1|FE451633
genomic: ATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
EST: AGCACCTCAAGCGATTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGATACCGATTTCGACGCCTTGGCTGACAAGGAACCATGGCTCEST: gi|169112908|gb|FE514660.1|FE514660
genomic: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
EST: ATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTCEST: gi|169039922|gb|FE447608.1|FE447608
genomic: ATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
EST: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTCEST: gi|169102324|gb|FE506548.1|FE506548
genomic: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
EST: AGCACCTCAAGCGATTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGATACCGATTTCGACGCCTTGGCTGACAAGGAACCATGGCTCEST: gi|169112110|gb|FE513453.1|FE513453
genomic: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
EST: AGCACCTCAAGCGATTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAG GTGACTCAAGATACCGATTTCGACGCCTTGGCTGACAAGGAACCATGGCTC
genomic: AGCACCTCAAGCGACTGGCGAGCATCGATTTGGCGCTCCATTCCGCGCAGgtagaattta ... ctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTC
ttcaaattgcttcgttctctattgttcttttttattttttctttgctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTCAATTCGACCAGGCTCGTCGTGAAACCAGACATGCTGTTTGGCAAGCGTG
cttcgttctctattgt CT-rich tract
tctattgttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaatttatttcttatctgtagtgtcgtgtttttcaaattgcttcgttctctattgttcttttttattttttctttgctcttgatagGTGACTCAAGAGACCGATTTTGACGCCTTGGCTGACAAGGAACCATGGCTCAATTCGACCAGGCTCGTCGTGAAACCAGACATGCTGTTTGGCAAGCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT