1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagttttatctcgagctcgacccttctgagcgttctgacttggttttgtttcaagGTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGGTTGGCCGAACCTCTGGGATATGTCTCCAAAGATGACCTCTTGCACGCTG
species | Selaginella moellendorffii |
transcript | EFJ27223 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGTCACCATTGTCAATGAGGCTGACGAGCTTCAAGGATACAACATTTAT GTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGGEST: gi|169083639|gb|FE495372.1|FE495372
genomic: TTGTCACCATTGTCAATGAGGCTGACGAGCTTCAAGGATACAACATTTATgtaagtttta ... ttgtttcaagGTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGG
EST: TTGTCACCATCGTCAATGAGGCTGACGAGCTTCAAGGTTACAACATTTAT GTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGGEST: gi|169019372|gb|FE427682.1|FE427682
genomic: TTGTCACCATTGTCAATGAGGCTGACGAGCTTCAAGGATACAACATTTATgtaagtttta ... ttgtttcaagGTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGG
EST: TTGTCACCATCGTCAATGAGGCTGACGAGCTTCAAGGTTACAACATTTAT GTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGGEST: gi|169021603|gb|FE428625.1|FE428625
genomic: TTGTCACCATTGTCAATGAGGCTGACGAGCTTCAAGGATACAACATTTATgtaagtttta ... ttgtttcaagGTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGG
EST: TTGTCACCATTGTCAATGAGGCTGACGAGCTTCAAGGATACAACATTTAT GTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAAACTTCA
genomic: TTGTCACCATTGTCAATGAGGCTGACGAGCTTCAAGGATACAACATTTATgtaagtttta ... ttgtttcaagGTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAA-CTTCA
aagttttatctcgagctcgacccttctgagcgttctgacttggttttgtttcaagGTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGGTTGGCCGAACCTCTGGGATATGTCTCCAAAGATGACCTCTTGCACGCTG
ttctgac putative branch site (score: 16)
ttttgtttc putative PPT
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttttatctcgagctcgacccttctgagcgttctgacttggttttgtttcaagGTCGGCGGAGGGATGGGCAGGACACATCGCATAGAAACTTCATTTCCTCGGTTGGCCGAACCTCTGGGATATGTCTCCAAAGATGACCTCTTGCACGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG