1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgggagagatctagtgaggcattgcatgaagtaagtcccttttgtttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCGACCTCTCTATCAATTCAGCAAA
species | Selaginella moellendorffii |
transcript | EFJ26379 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169096025|gb|FE497338.1|FE497338
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169066952|gb|FE475955.1|FE475955
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169034273|gb|FE445113.1|FE445113
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169034272|gb|FE445112.1|FE445112
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169078408|gb|FE488283.1|FE488283
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169062870|gb|FE472373.1|FE472373
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169037033|gb|FE442680.1|FE442680
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169093160|gb|FE494193.1|FE494193
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169109375|gb|FE514099.1|FE514099
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|70670008|gb|DN838585.1|DN838585
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169096024|gb|FE497337.1|FE497337
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169031995|gb|FE440175.1|FE440175
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169106336|gb|FE506256.1|FE506256
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169069286|gb|FE480045.1|FE480045
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: GGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169045824|gb|FE451719.1|FE451719
genomic: GGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169046522|gb|FE457461.1|FE457461
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169073723|gb|FE483983.1|FE483983
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCCAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169064575|gb|FE471306.1|FE471306
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169036394|gb|FE443484.1|FE443484
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCEST: gi|169066953|gb|FE475956.1|FE475956
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
EST: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAG GCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
genomic: AGAAGGAGGAGGGCCAGGAGCCGGATGCTTTCGAGCTCACGGTTGCGCAGgtttgggaga ... ttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGC
tgggagagatctagtgaggcattgcatgaagtaagtcccttttgtttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCGACCTCTCTATCAATTCAGCAAA
tcccttttgtttttgc CT-rich tract
ttttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgggagagatctagtgaggcattgcatgaagtaagtcccttttgtttttgctcagGCGCTATCAGAGCTTGAGGGCGCTAATCAGGAGCTCCGAGGCGACTTGCGCGACCTCTCTATCAATTCAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT