1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtctttactcttgcactaggtagtttttttctgtttgtgctgggcgagggtttagttgacgagtttttatgaaggcagGTACTGATAAGTTGAAGTCACTACAGGACGAGTACGCTTTGAAGGAGGAGCTGCTCCTGACAGTACTCAAGGAGTTTGAGCAAGCCGAATCCAAAGAGAA
species | Selaginella moellendorffii |
transcript | EFJ26251 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGAAGCAAGAGCACGATCCAGCGAAAGAAATTCACAGCCACGCTAGTG GTACTGATAAGTTGAAGTCACTACAGGACGAGTACGCTTTGAAGGAGGAGCEST: gi|169069389|gb|FE479485.1|FE479485
genomic: GCACAAGCAAGAGCACGATCCAGCGAAAGAAATTCGCAGCCACGCTAGTGgtgagtcttt ... atgaaggcagGTACTGATAAGTTGAAGTCACTACAGGACGAGTACGCTTTGAAGGAGGAGC
EST: GCACAAGCAAGAGCACGATCCAGCGAAAGAAATTCGCAGCCACGCTAGTG GCAGGTACTGATAAGTTGAAGTCACTACAGGACGAGTACGCTTTGAAGGAG
genomic: GCACAAGCAAGAGCACGATCCAGCGAAAGAAATTCGCAGCCACGCTAGTGgtgagtcttt ... atgaaggcagG----TACTGATAAGTTGAAGTCACTACAGGACGAGTACGCTTTGAAGGAG
tttttttctgtttgtgctgggcgagggtttagttgacgagtttttatgaaggcagGTACTGATAAGTTGAAGTCACTACAGGACGAGTACGCTTTGAAGGAGGAGCTGCTCCTGACAGTACTCAAGGAGTTTGAGCAAGCCGAATCCAAAGAGAA
agttgac putative branch site (score: 4)
tttttat putative PPT
tttttatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctttactcttgcactaggtagtttttttctgtttgtgctgggcgagggtttagttgacgagtttttatgaaggcagGTACTGATAAGTTGAAGTCACTACAGGACGAGTACGCTTTGAAGGAGGAGCTGCTCCTGACAGTACTCAAGGAGTTTGAGCAAGCCGAATCCAAAGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA