1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagatttctcgcatgcctctggaaatttcgaggttttccttccaagaacacaccccgctctcgcatgtttcccccaagaactcatcgattctcttccagGCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTGGCTGGCCTGGACAAGAGCAAGACCGCGACGATCCGCGGCGATCCAAAGT
species | Selaginella moellendorffii |
transcript | EFJ26109 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACACCGCCGACTGCTACGGCCCCTTCGCCAACGAAATCCTCGTCGGCAAG GCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTGEST: gi|169074922|gb|FE482777.1|FE482777
genomic: ACACCGCCGACTGCTACGGCCCCTTCGCCAACGAAATCCTCGTCGGCAAGgtgagatttc ... tctcttccagGCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTG
EST: ACACCGCCGACTGCTACGGCCCCTTCGCCAACGAAATCCTCGTCGGCAAG GCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTGEST: gi|169042468|gb|FE453666.1|FE453666
genomic: ACACCGCCGACTGCTACGGCCCCTTCGCCAACGAAATCCTCGTCGGCAAGgtgagatttc ... tctcttccagGCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTG
EST: ACACCGCCGACTGCTACGGCCCCTTCGCCAACGAAATCCTCGTCGGCAAG GCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTG
genomic: ACACCGCCGACTGCTACGGCCCCTTCGCCAACGAAATCCTCGTCGGCAAGgtgagatttc ... tctcttccagGCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTG
agaacacaccccgctctcgcatgtttcccccaagaactcatcgattctcttccagGCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTGGCTGGCCTGGACAAGAGCAAGACCGCGACGATCCGCGGCGATCCAAAGT
ttctcttcc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatttctcgcatgcctctggaaatttcgaggttttccttccaagaacacaccccgctctcgcatgtttcccccaagaactcatcgattctcttccagGCAATCCGAGGGATCCGCGACAGGGTCCAGATCGCCACGAAATTCGCGGTGGCTGGCCTGGACAAGAGCAAGACCGCGACGATCCGCGGCGATCCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA