Sequence
atgc intronic sequence ATGC exonic sequence...tttattttttatttcttgctagacaagttcttgacatttcatcaagtccattgacattggtgtttcatgcgtctcacgttgctattttttctccttccagTGCCCCGAATGGAACTTGTGGGAAACCCGTTCTTCGTGCGGTAGTGCCATCTTTTTGCGCCATTCACTTCCAGTTAGCCCAGAGGCAAGCTGCTCGAGTA
Basic information
species | Selaginella moellendorffii |
transcript | EFJ26104 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtccattgacattggtgtttcatgcgtctcacgttgctattttttctccttccagTGCCCCGAATGGAACTTGTGGGAAACCCGTTCTTCGTGCGGTAGTGCCATCTTTTTGCGCCATTCACTTCCAGTTAGCCCAGAGGCAAGCTGCTCGAGTA
gtctcac putative branch site (score: 3)
tctcacgttgctattt CT-rich tract
tattttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttattttttatttcttgctagacaagttcttgacatttcatcaagtccattgacattggtgtttcatgcgtctcacgttgctattttttctccttccagTGCCCCGAATGGAACTTGTGGGAAACCCGTTCTTCGTGCGGTAGTGCCATCTTTTTGCGCCATTCACTTCCAGTTAGCCCAGAGGCAAGCTGCTCGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- -atttttt
- - - - - atttctt
- - - - - - - - - - - - -agttctt
- - - - - - - - - - - - - - - - - - tttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacgtt