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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcgatggcttcgatcccatcaaggccgcggcgaagagcgccgatcgctccaatgtgatgttcttcgcaagcgcgctgctccagGCCGATGAATCCGAGTGCCCGGAGGTGGAGATCGCGGCGGATGTGGACGTCGTGACGCTGCCATTCTCGTCGGGCACCACCTCGCTGCCCAAGGGCGTGG

Basic information

species Selaginella moellendorffii
transcript EFJ26044
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26044 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G054013_T04 (Zea mays), 3'ss of exon 1
----------------------------------------------------gtgagcgatggcttcgatcccatcaaggccgcggcgaagagcgccgatcgctccaatgtgatgttcttcgcaagcgcgctgctccagGCCGATG-----AATCCGAG--TGCCCGGAGGTGGAGATCGCGGCG-GATGTGGACGTCGTGACGCTGCCAT-TCTCGTCGGGCACCACCTCGCTGCCCAAGGGCGTGG----------------------------
                                                    |    || |  | |||  | |  |  ||| ||  | ||| ||| ||  |   || | |         || | | || |  ||  ||||  || |     || || |   ||  |    | |  |    || || | | ||   |  |   |  | |||  |||  ||   || | ||  ||||| |   | | ||                             
gcgacggcgacgccctcccggaggtgtccatctccccggacgaccccgtggcgctgccgttctcgtcgggcaccacggggctgc--ccaagggcgtcgtgctgacccacggcggccaggtcacgaacgtggcgcagcaggtggacggcgcgaaccccaacctgtacatgcgggaggGCGACGTCGCGCTCTGCGTGCTGCCTCTGTTCCACATCTTCTCCCTCAACTCCGTGCTGCTCTGCGCCATGCGGGCCGGCGCGGCGGTCATGCTCATGCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggcgaagagcgccgatcgctccaatgtgatgttcttcgcaagcgcgctgctccagGCCGATGAATCCGAGTGCCCGGAGGTGGAGATCGCGGCGGATGTGGACGTCGTGACGCTGCCATTCTCGTCGGGCACCACCTCGCTGCCCAAGGGCGTGG
                                              ctgctcc  CT-rich tract