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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

Basic information

species Selaginella moellendorffii
transcript EFJ26016
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattc-cccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                                 | ||  ||||     ||||| |             ||           || | | | ||  |||      |||  |  |||| ||         |   ||||||||||||| || || || || || || ||||| || || || ||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||
---------------------------------------------------------------------------------ccga--ttggagatcggatttgtggggaaaaaaagttgggagctttggattctgttctt--gatggggggatttgcttatttgctttcattcgatctgttgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os01g73130.1 (Oryza sativa), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                                    |     |  | |  |   ||         ||||     ||| |   |  |   ||| |||      ||||      |      |||   |   |||||||||||||| || || || || || ||   ||| || || || ||||||  |||||| ||||||||||||||||| |||||||| ||||||||||| |||||
---------------------------------------------------------------------------------agaaaaaaagatcgtaaaaa-gctcgatcaaacgatcgatctgcaa--gtttctgcattacgaattacgaattgatggatgaaatttggttataattttgcagGCATGGGGGCGGCGTACGGGACGGCTCGGAGCGGCGTCGGGGTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                                               |    || |  || | | |  ||  ||| |      || ||| |   ||||  | |        ||  | || |     | |     ||||||||| || ||||| || ||||| ||||| || || || |||||||||||||| |||||||| ||||| || |||||||| || ||||| || || ||
----------------------------------------------------------------------------------------------gtaagctcccaatcttcccc--ttcactttctcggggccagatct---gatctgaga---tgaggttgacacacgacgcatgca----agGCATGGGCGCCGCCTACGGCACCGCCAAGAGCGGCGTGGGCGTGGCGTCCATGGGGGTGATGCGCCCGGAACTGGTGATGAAGTCCATCGTCCCCGTCGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcg-cgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                               |  |  |   |   |  |  |  |  |||      |||   ||||  | |    | || |    | |||  |  | | |  || | |      ||   |  |||||||||||| || || || || ||||| ||||| || || || |||||||| ||||| |||||||||||||||||||| ||||| || |||||||| |||||
-------------------------------------------------------------------------------gatttggtccga-tcgggtgtgggatttcagaaatcgacagccttttcccg--tcagacaggcaggtcctgac-tacgctgttcttttgcttgatc--cgatgcagGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgc--gcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                               | | || |  | | ||     |||  |||| |   ||| |   |||       |  || |    |  |  |  | |   |  || | |      ||   |   ||||||||||| || || || || ||||| ||||| || || || |||||||| ||||| |||||||||||||||||||| ||||| || |||||||| |||||
-----------------------------------------------------------------------------tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctt-------tttcggtcgggcagttgctgactaggctgttattttgcttgatc--cggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                               |   ||  |||||   ||||| |   |  ||| |   | |    || | | |   | |  |   ||  ||  ||  |||  | | | |||   | |   | ||||||||||| || || || || || || |||||||| || || |||||||||||||| || ||||| || |||||||| ||||| || |||||||| |||||
-------------------------------------------------------------------------------gagagaatttgggt--tggatccatgtggctgggacgtgtgagggcgaaatttttggtggtg-aatgacatgatctccctctgtgt-atgtg-tgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 1
----gtaagttcttgcctctcaccgccatggctgga----ctggatctagggttgtggtgcgtgtctcggctgc--gcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccaca-atcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
    |  | |   |   |||| |     | | |        |  || ||   |   | |      |    || |       | | | | ||   ||| || |  || ||     ||| |||     | || |||  ||  ||    | | |  |||     | | |      ||    |  | | |  || | ||| |||||||| || || ||||| ||||||||||| || || |||||||| |||||||||||| |||||||||| |||||||| ||||||||||| |||||
gttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgata-acaacaatactactaataataataccaagctctagcgtgagttattgaa--aactttctgttatctgtctttgttacggattaaaaaaatatgattt---attccgtggcctttatttttattatgattggtagGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA13G03470.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgcc--ttcctgcgcga---tttccttgccacaatcccgatatttc-gatcccaaaattccccattttctcatggaattttcttt------gcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
    |||| |  |||||       | |    | |  ||  |   |   | |     |              |||    | |  || ||   |   | | ||   |  ||  ||    |   |||   | ||    | |   |  | | |||   |||||     ||| | |    |  || | ||       | ||| |||||||| || |||||||| || |||||||| || || |||||||| ||||| |||||| |||||||||| |||||||| ||||||||||| |||||
----gttcgtcactctctttttatttgtaaaattttattcaatataacgataacaataataataata--atattagggt-ctagatctatcgtagttggttgaacagttattgtaaaaacctttttgtacctgtcttcgattgctacagattaaaaaatgatttattctgtggctgttttattttatgattggtagGTATGGGAGCGGCGTATGGAACGGCGAAGAGTGGGGTGGGGGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                                   |    |    |||  | ||       |      |||  ||     | | |||| |      ||     ||     |   | |   |   || | ||| |||| |||||||| || || |||||||| ||||| || || || || ||||| |||||||||||| |||||||||| |||||||||||||||||||| || ||
-----------------------------------------------------------------------------------gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                      || |    ||   | | |||  | || || ||    || |    |  ||  |||     ||    | || |        |       |||||     || |    | ||   ||| ||||||||||||||||| || |||||||||||||| || ||||| |||||||| |||||| | || ||||| |||||||| || || || || || ||
----------------------------------------------------------------------cactcatgtgaaagtgattgatcgatcgaatcttaatctta---gggttgtttgaagtgat---aaaatctg-----tgaggaatttcatttgtatttgaa---ctgttgatagGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA02G05630.2 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgcctt-cctgcgcgatttccttgccacaat-cccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                                        |     |   | ||  |    |   | | |||  ||| | || | ||||| |      ||     ||     |   | |   |   || | ||| |||| ||||| || || || || ||||| ||||| || || || || ||||| |||||||||||| |||||||||| |||||||||||||||||||| || ||
---------------------------------------------------------------------------------------gtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcagGTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                             |||| |     |     | |     |   | | | ||   ||| | |  |   |  |  | ||||  |    | |||   |  |||   |   | |  |   || ||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| |||||| | || ||||| |||||||| || || || || || ||
---------------------------------------------------------------------------ttatgcgtatatataaagaaagacaaagaaattcagagc---ttcttcgttagctttgcattttttctgt----agatttatc--tttaatactaattgatggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                              |   | |     |   | | | |      | |   ||||  | ||||   | |  |  ||  |  |||   ||  |    ||| | |   | | |  |    | ||| ||||||||||||||||| || || |||||||| || || ||||| || ||||| |||||| | |||||||| |||||||| || || || || || ||
----------------------------------------------------------------------------tgtatataaagaaagaaaaagaaattctgagcttcttcgatagctttgc---attttctgtagatttatctttaa--tatgaattgttt---gaactgatggaggaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgca-atgcctgagcttgggccatggattcg-ccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                       ||| || | |  |||   ||    || |||      ||  |    |  ||  |||    |||   ||||          ||||||    |     |      ||||| ||   ||| ||||||||||||||||| || || |||||||| || || ||||| |||||||| || ||| | || ||||| |||||||| ||||| || || || ||
----------------------------------------------------------------------aatttcacacgtgtgaaagtgattgatcgatcgaattttaatcttagggttgtttgtttgaatt--gata----------aaaatttgtgaggaatttt----attttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT4G34720.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                    |    |    ||| |   || |     ||||    |||   || | | |||   ||  |  || | || |    | |     ||| |     || |  || | || || ||   ||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||||| || ||| | || ||| | ||||||||||| || || || || ||
--------------------------------------------------------------------gattctcttgtgcattc-ctcgaattttgga---acctcattgggtgctttatatg--atcatac-gaaaccatgtt----gaatccttggattgc--attggatgttatt---agGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT2G16510.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                             ||   ||  ||| |  ||     | |  ||   |      ||  |       ||   |     |||  |  |||||     || || | |  | |||||  ||  ||| ||||||||||| |||||||| ||||||||||||||||| ||||| || ||||| |||||| | || ||| | || ||||| || || || || |||||
-----------------------------------------------------------------------------attagtgttcttagatcagaatctggattttaggtattgatttgtgattgtgattggg-----tcgggcgtaaaatgag--atgttgttactggattttggttttagGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                               |  ||    |    ||  |  ||       ||||   | |  | | || |  |        ||| | |    | |||  || |  |||        | |  |  ||  |||  |     ||| ||||||||||| || || || |||||||||||||| |||||||| || ||||| |||||| |||||||| | |||||||| || || || ||||| ||
------------------------------------------------------------aattatgctttttcttcatatcgaagg------catg---ttgattacttgtgtaa-------accatagtt---agattgtgaccttaaagagtgt-gtatctttgtgttattaaca----agGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                        |  ||    |  | |   ||  |  |     || || ||   | |||   |     |     |   |||| | |    |  ||    ||||    ||| || |      |||| ||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| |||||| | |||||||| || ||||| |||||||| ||||| ||
------------------------------------------------------------------------tctcagcaaccaaaccgaggttaatgtccgtccgtcttg---ggtttggat-ttggatctagggcttttcaaacgtgga--tctgattttttatttgggatct------cagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCATGGGTGTGATGAGACCGGAGCTTGTTATGAAGTCGATCGTTCCAGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                         | | | |    |   ||     |   ||| |    | |  |  ||||||    | |     |    ||   ||    |||       ||||| ||||    |||||| |||||||||| || |||||||| || |||||||| || || || ||||| |||||||| |||||||| ||||||||||| ||||||||||| || ||||| ||
-------------------------------------------------------------------------tccgacgaaacaaagtg--ttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatg------tttctaatgg---cttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccac--aatcccgatatttcgatcccaaaattccccattttctcatggaatttt--ctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                                       || |   ||   ||| ||||| |   |  ||||      ||   |    ||||| | ||||    |  | |  |||  ||  ||   || |   |||  ||| ||||||||||| |||||||| || |||||||| || ||||||||||| ||||| |||||| |||||||||| |||||||| ||||| || ||||| ||
--------------------------------------------------------------------------------------attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcga--ttctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctt--tgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                            ||    |||  ||| |        | |   |  ||   || ||       |  | |  | |   ||  | || | ||      ||  | |  |||  ||| |    ||||||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||||||||||||
----------------------------------------------------------------------------aagcagtgacgttgagggcctatcttgttgttttgaaggactttg-----atcagcttgctcgctctttaccgatat-----gttaacccgaggaggtttttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                            ||   | ||  ||||||        | | |||  | ||    ||   |  |    | ||| ||| | |      |||     |   |      |  ||||    ||||||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
--------------------------------------------------------------------------ataacagc-gatgttgggc----accccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaat-----aaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                                         |  | |    ||| || | | |    |||| |||      | |  ||| ||    | ||   | ||        |    |    |||   | |||||||||| ||||| |||||||| || |||||||| || |||||||| |||||||| ||||||||||| ||| | ||||||||||| ||||||||||| ||
------------------------------------------------------------------------------------gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgattcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatgga--ttcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                           |  ||   |   ||||||  |  |  |||   |||||  || |       |   | |   ||| | | |    |   || |    | | |   |||  |||   |   |||||||||| ||||| ||||| || || |||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||| ||||||||||| |||||
--------------------------------------------------------------------------cccgtgaacggtgttgggcacttaagcttcaatttcctcagctag------ggtgcgacttcgaaactcctggacatgaacta---aatgttgaatgttattgcgt---cagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT

upper sequence: EFJ26016 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                                                    | ||   |  || |   | |||||  |  ||  ||   | | | |  ||    |||  ||| |   || |   || |||   | |             | |   || |    ||||||||||| |||||||||||||| || || ||||| ||||||||||| || ||||| || ||||| || ||||| |||||||| || ||||| ||||||||
--------------------------------------------------------------------gccaccactgtgtcactg-ttgggaaagtgagacgatgtgcagtg-aatcattttgt-acagttgtgaaaccgcgttccttgact-------------acgatgttgttggcgcagGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169045837|gb|FE453071.1|FE453071
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169026566|gb|FE434814.1|FE434814
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169049088|gb|FE457076.1|FE457076
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169041312|gb|FE446855.1|FE446855
EST:     GATTCATNGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169087043|gb|FE496188.1|FE496188
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169112705|gb|FE515081.1|FE515081
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169110062|gb|FE511574.1|FE511574
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169087044|gb|FE496189.1|FE496189
EST:     GGCGCCCTTCTTCGGATTCATCGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169066184|gb|FE475684.1|FE475684
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169049954|gb|FE458046.1|FE458046
EST:     GGCGCCCTTCTTCGGATTCATNGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169095914|gb|FE499957.1|FE499957
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169095950|gb|FE497302.1|FE497302
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169036530|gb|FE444114.1|FE444114
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169041326|gb|FE446856.1|FE446856
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169024664|gb|FE432834.1|FE432834
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169049955|gb|FE458047.1|FE458047
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
EST: gi|169057068|gb|FE466295.1|FE466295
EST:     GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT                         GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 85

AGTCGGGGGAGATTCATGGCTTCCACCGACGCATTCAGTGGCGATGAGACGGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
                                           ttttctttgc  CT-rich tract
                                         aattttcttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgatatttcgatcccaaaattccccattttctcatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCGTCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT