1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcaaccctttttcttcccttttggaattcctttccttttgatgctttggttttgatcgtgactggtttgattgtttcttgtttcagGGGGATGCTGGGCTTTCGCCACGACTGGTGCTATAGAAGGAATCAACCAGATTGTCACGGGCCAGCTTATGAGCTTATCCGAGCAAGAGTTGATCGACTG
species | Selaginella moellendorffii |
transcript | EFJ25935 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGAGGCAACATGGCGCGGTCACGGCACCCAAAGATCAAGGCTCGTGTG GGGGATGCTGGGCTTTCGCCACGACTGGCGCTATAGAAGGAATCAACCAGA
genomic: TTGGAGGAAACATGGCGCGGTCACGGCACCCAAAGATCAAGGCTCGTGTGgtacgcaacc ... cttgtttcagGGGGATGCTGGGCTTTCGCCACGACTGGTGCTATAGAAGGAATCAACCAGA
ttccttttgatgctttggttttgatcgtgactggtttgattgtttcttgtttcagGGGGATGCTGGGCTTTCGCCACGACTGGTGCTATAGAAGGAATCAACCAGATTGTCACGGGCCAGCTTATGAGCTTATCCGAGCAAGAGTTGATCGACTG
ttgtttcttgtttc CT-rich tract
ttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcaaccctttttcttcccttttggaattcctttccttttgatgctttggttttgatcgtgactggtttgattgtttcttgtttcagGGGGATGCTGGGCTTTCGCCACGACTGGTGCTATAGAAGGAATCAACCAGATTGTCACGGGCCAGCTTATGAGCTTATCCGAGCAAGAGTTGATCGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA