Sequence
atgc intronic sequence ATGC exonic sequence...aagtcgcttgaagtggtcagaaggctcgtgctatcatagaaactccaaaactttgattttcaagttgcatcgttttaaacgattagtgtgatccttgcagGACTCCGTCGTTGTGGGAAGAGCTGTAGGCTTCGCTGGATAAACTACCTGCGTCCCAATCTCAAGCACGGAAACATCACCGAAGAAGAAGACGAGCTTAT
Basic information
species | Selaginella moellendorffii |
transcript | EFJ25905 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaactttgattttcaagttgcatcgttttaaacgattagtgtgatccttgcagGACTCCGTCGTTGTGGGAAGAGCTGTAGGCTTCGCTGGATAAACTACCTGCGTCCCAATCTCAAGCACGGAAACATCACCGAAGAAGAAGACGAGCTTAT
ctttgat putative branch site (score: 5)
tccttgc putative PPT
tttgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagtcgcttgaagtggtcagaaggctcgtgctatcatagaaactccaaaactttgattttcaagttgcatcgttttaaacgattagtgtgatccttgcagGACTCCGTCGTTGTGGGAAGAGCTGTAGGCTTCGCTGGATAAACTACCTGCGTCCCAATCTCAAGCACGGAAACATCACCGAAGAAGAAGACGAGCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- -tcgcttg
- - - - - - - - - - - -gctcgtg
- - - - - - - - - - - - - - - - - - - - aactcca
- - - - - - - - - - - - - - - - - - - - - - - - - -tttgatt