1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggaaagaatcccttcccaaaagctgggaaaaagtcccgagatccccctttttttcccagattctcacagctcctcgttttctggattgaatctgtagGAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGATTGGCTGCCCGTTGGCAGTGGCTCCAGGAACGCCAAGTGGTGGTACTCGG
species | Selaginella moellendorffii |
transcript | EFJ25874 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAG GAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGATEST: gi|169053550|gb|FE463319.1|FE463319
genomic: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAGgtaggaaaga ... gaatctgtagGAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGAT
EST: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAG GAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGATEST: gi|169083876|gb|FE492788.1|FE492788
genomic: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAGgtaggaaaga ... gaatctgtagGAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGAT
EST: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAG GAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGATEST: gi|169072771|gb|FE484349.1|FE484349
genomic: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAGgtaggaaaga ... gaatctgtagGAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGAT
EST: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAG GAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGAT
genomic: ACAGCACCAACAATGGCTCCTCGCCTCCCTCCTCCACGCAGGCATTCAAGgtaggaaaga ... gaatctgtagGAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGAT
ccccctttttttcccagattctcacagctcctcgttttctggattgaatctgtagGAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGATTGGCTGCCCGTTGGCAGTGGCTCCAGGAACGCCAAGTGGTGGTACTCGG
ttctcac putative branch site (score: 89)
ttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaaagaatcccttcccaaaagctgggaaaaagtcccgagatccccctttttttcccagattctcacagctcctcgttttctggattgaatctgtagGAGTATGTCGAGGACAAAGGCCACGCTCGAACTGTGAAATCCGTGGACGATTGGCTGCCCGTTGGCAGTGGCTCCAGGAACGCCAAGTGGTGGTACTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG