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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatctttcagATGTATGTCACACCTCCGGATACTGATGTTTATTCAATCCCCAAGGTTATCGGGAAAATGCCGAAGCAG

Basic information

species Selaginella moellendorffii
transcript EFJ25581
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25581 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA04G09200.1 (Glycine max), 3'ss of exon 1
-----------------------------------------------gtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatcttt-cagATGTATGTCACACCTCCGGATACTGATGTTTATTCAATCCCCAAGGTTATCGGGAAAATGCCGAAGCAG
                                                |    ||    |   | ||| | |      ||||  |   ||    ||   |||||||||| || ||||||||||| |||||||||||||| ||||||||| |||    ||||||| || ||
gtttctaaccctaataataccacgcttcgaatccatgcatacctcttcttttctttgttcaacttttcaccgttgagttttgaatctttgttcgttcgtagATGTATGTTACTCCTCCGGATACAGATGTTTATTCAATTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG

upper sequence: EFJ25581 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA06G12370.1 (Glycine max), 3'ss of exon 1
---------------------------gtaagtttaaagctggtgttcg--ctgccttcgtttggctgaatggatcttt-cagATGTATGTCACACCTCCGGATACTGATGTTTATTCAATCCCCAAGGTTATCGGGAAAATGCCGAAGCAG
                                |||   | || |||||    |  |  ||||  | |||||   | ||   |||||||||| || ||||| ||||| |||||||||||| | ||||||||| |||    ||||||| || ||
gttctacacttcgattctacctcttcttcttcttttttgttgttgttcaacttttcaccgttgagttgaatctttgttcgtagATGTATGTTACTCCTCCAGATACAGATGTTTATTCAGTTCCCAAGGTTCTCGCTCCAATGCCGCAGAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatctttcagATGTATGTCACACCTCCGGATACTGATGTTTATTCAATCCCCAAGGTTATCGGGAAAATGCCGAAGCAG
                                                tctttc  CT-rich tract
     agtttaaa  TA-rich tract