Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctttgcgggagctcggtcgcccatatctgctcgtgaatccgtagGTTTCTCGGCGTCTCTGAGACTTTGGTGCGGCAGCGAGTGCCTGGCGCTCGTCATCGGGCCTTTGCATCGTCTGTAGCGGCAGAATCCGAGACGGAAATA

Basic information

species Selaginella moellendorffii
transcript EFJ25432
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|70669703|gb|DN838280.1|DN838280
EST:     GCATTTCAGCTCGGCGCAGTCCGGCGAGCATCTTGCCTCACCACTTGCAG                         GTTTCTCGGCGTCTCTGAGACTTTGGTGCGGCAGCGAGTGCCTGGCGCTCG
genomic: GCATTTCAGCTCGGCGCAGTCCGGCGAGCATCTTGCCTCACCACTTGCAGgtaaatcttt ... gaatccgtagGTTTCTCGGCGTCTCTGAGACTTTGGTGCGGCAGCGAGTGCCTGGCGCTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaatctttgcgggagctcggtcgcccatatctgctcgtgaatccgtagGTTTCTCGGCGTCTCTGAGACTTTGGTGCGGCAGCGAGTGCCTGGCGCTCGTCATCGGGCCTTTGCATCGTCTGTAGCGGCAGAATCCGAGACGGAAATA
               taaatcttt  TA-rich tract