1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gattttttctcgcctctttcttaccgcattcgaagtatcaggaacattttcattctctagttcatactttgattgatcagtaaacgtgctttgtttctagAACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATCGTCTTCGGCTTGTCCATAGGCTTCGGAGTGATCGCGCCGGTTGTCGCGG
species | Selaginella moellendorffii |
transcript | EFJ25134 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAG AACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATCEST: gi|169038967|gb|FE449684.1|FE449684
genomic: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAGgtgagaattc ... ttgtttctagAACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATC
EST: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAG AACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATCEST: gi|169054078|gb|FE462313.1|FE462313
genomic: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAGgtgagaattc ... ttgtttctagAACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATC
EST: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAG AACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATCEST: gi|169075304|gb|FE483562.1|FE483562
genomic: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAGgtgagaattc ... ttgtttctagAACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATC
EST: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAG AACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATC
genomic: CGTTCAGAGCTTTCAAGACGGACGCTCGCGAGGGTGAAGTTCCCTCCGAGgtgagaattc ... ttgtttctagAACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATC
attttcattctctagttcatactttgattgatcagtaaacgtgctttgtttctagAACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATCGTCTTCGGCTTGTCCATAGGCTTCGGAGTGATCGCGCCGGTTGTCGCGG
gattgat putative branch site (score: 8)
ctttgtttct putative PPT
atacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattttttctcgcctctttcttaccgcattcgaagtatcaggaacattttcattctctagttcatactttgattgatcagtaaacgtgctttgtttctagAACCTCGAGGAACAGAGACGAGAGAAGCGCAAGCAGCTCAAAGACCGGATCGTCTTCGGCTTGTCCATAGGCTTCGGAGTGATCGCGCCGGTTGTCGCGG
- - ttttctc
- - - - - - - -ctttctt
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