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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagttttttcgaagcctttccttcatcgcttagttgtactgttatgcatgccagGGCCAAGCGACTAGAACGGTTGCTAGAAACTCCTGCAAGGATTTACTACAAGTACGAGGGTGTGAGTCCAGCGGGATCACACAAGCCGAACACGGCCGTC

Basic information

species Selaginella moellendorffii
transcript EFJ24275
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24275 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os06g42560.3 (Oryza sativa), 3'ss of exon 2
-------------------------------------gtttgagttttttcgaagcctttcct-----tcatcgct-tagttgtactgttatgcatgccagGGCCAAGCGACTAGAACGGTTGCTAGAAACTCCTGCAAGGATTTACTACAAGTACGAGGGTGTGAGTCCAGCGGGATCACACAAGCCGAACACGGCCGTC
                                     | | || ||     ||   ||||  |     |  | ||  | |  |   | ||    |||| ||||| | | | || ||   | |||| |  || || || | ||| |||||||||||||||||   ||| || ||||| || ||||||||||||||||| || 
cctctagaacttcgtctgcattgttgccaatctcagcgctggaattcagaagagttctttgttaaaagttgttgcaatggcggatatattggtgatgc-agGGCGAGGAGGCTGGAGAAGCTGCTGGGCACGCCGGCGAAGATCTACTACAAGTACGAGGGGACGAGCCCGGCGGGGTCGCACAAGCCGAACACGGCGGTG

upper sequence: EFJ24275 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S48_37V6.2 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------gtttgagtt--ttttcgaagcctttccttcatcgcttagttg-tactgttatgcatgccagGGCCAAGCGACTAGAACGGTTGCTAGAAACTCCTGCAAGGATTTACTACAAGTACGAGGGTGTGAGTCCAGCGGGATCACACAAGCCGAACACGGCCGTC
                                        |   |  ||  | |  | |     || |  | ||  || | | || ||| ||| | | ||||||   | |||| |||   ||  | || || || ||| |||| |||||||||||||| ||||| |||||||| || || |||||||| ||||| ||  ||
tttgacagtgattttggacgatgctctgccagaaaatatggcaagcattaatatgtggaattactcatcaaccgtataatggatattgtgatg-aggacagGGCTTGGAGACTTGAAAAATTATTGGATACACCAGCACGGATCTACTACAAGTACGAAGGTGTCAGTCCAGCAGGCTCTCACAAGCCTAACACAGCAATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagttttttcgaagcctttccttcatcgcttagttgtactgttatgcatgccagGGCCAAGCGACTAGAACGGTTGCTAGAAACTCCTGCAAGGATTTACTACAAGTACGAGGGTGTGAGTCCAGCGGGATCACACAAGCCGAACACGGCCGTC
     ttttt  TA-rich tract