1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggaatgaacagtggcagtggcactagtagcagtagttcgtagcagtagcgaggcttggctgcgctgatataactcttttctctgtcttgtctttgccagGCTCGCCGCTCATGTTGGCTGCTGCAGCTGCCGCTAGAGGAGACCACCTAGGAATGCAGAGCGCAATGAGCATGCGCGGTCCTTTCACTGCGAACCAGTG
species | Selaginella moellendorffii |
transcript | EFJ24024 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
gtagcgaggcttggctgcgctgatataactcttttctctgtcttgtctttgccagGCTCGCCGCTCATGTTGGCTGCTGCAGCTGCCGCTAGAGGAGACCACCTAGGAATGCAGAGCGCAATGAGCATGCGCGGTCCTTTCACTGCGAACCAGTG
atataac putative branch site (score: 12)
ctcttttctctgtctt CT-rich tract
tgatataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaatgaacagtggcagtggcactagtagcagtagttcgtagcagtagcgaggcttggctgcgctgatataactcttttctctgtcttgtctttgccagGCTCGCCGCTCATGTTGGCTGCTGCAGCTGCCGCTAGAGGAGACCACCTAGGAATGCAGAGCGCAATGAGCATGCGCGGTCCTTTCACTGCGAACCAGTG
- -aatgaaca
- - - - - - - gcagtggc
- - - - - - - - - - - - -agtagca
- - - - - - - - - - - - - - agcagta
- - - - - - - - - - - - - - - - - agttcgt
- - - - - - - - - - - - - - - - - - - - - - - - - -aggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgcgc