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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcttgtggactttcggaaatgtgactaagcccaccatttgttaaacttgcagCATGAGCGAAGCATATGAAATTGAGCTCAAGGTGCGCGATTACGAGTTAAACAACTATGGTCTCGTACAGAACACGGTGTACGCGAGCTACTGCGACCAT

Basic information

species Selaginella moellendorffii
transcript EFJ23893
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042068|gb|FE448521.1|FE448521
EST:     GGATCTGCACGGGACAGCGTCAAGGGAGAATTCTTTGGCCCGCAACATAG                         CATGAGCGAAGCATATGAAATTGAGCTCAAGGTGCGCGATTACGAGTTAAA
genomic: GGATCTGCACGGGACAGCGTCAAGGGAGAATTCTTTGGCCCGCAACATAGgtaaattctt ... aaacttgcagCATGAGCGAAGCATATGAAATTGAGCTCAAGGTGCGCGATTACGAGTTAAA
EST: gi|169042067|gb|FE448520.1|FE448520
EST:     GGATCTGCACGGGACAGCGTCAAGGGAGAATTCTTTGGCCCGCAACATAG                         CATGAGCGAAGCATATGAAATTGAGCTCAAGGTGCGCGATTACGAGTTAAA
genomic: GGATCTGCACGGGACAGCGTCAAGGGAGAATTCTTTGGCCCGCAACATAGgtaaattctt ... aaacttgcagCATGAGCGAAGCATATGAAATTGAGCTCAAGGTGCGCGATTACGAGTTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcttgtggactttcggaaatgtgactaagcccaccatttgttaaacttgcagCATGAGCGAAGCATATGAAATTGAGCTCAAGGTGCGCGATTACGAGTTAAACAACTATGGTCTCGTACAGAACACGGTGTACGCGAGCTACTGCGACCAT
                                      atttgttaaa  TA-rich tract