1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatccactggctctcgtgtttttctcttcgtgtttttccttaactttgttcttgtttttctcatagACACTGAGCTGCGAGACAGACTAAACAGGATATTGGCGACCGAGTACTTCACCATGACGCCTGAGCTGCAGACTGTAACATCAGAGATCGCAGTGGGACA
species | Selaginella moellendorffii |
transcript | EFJ23873 |
intron # | 1 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: AACATCCTCAACGTGACAT ACACTGAGCTGCGAGACAGACTAAACAGGATATTGGCGACCGAGTACTTCA
genomic: AACATCCTCAACGTGACATgtatccactg ... tttctcatagACACTGAGCTGCGAGACAGACTAAACAGGATATTGGCGACCGAGTACTTCA
tctcgtgtttttctcttcgtgtttttccttaactttgttcttgtttttctcatagACACTGAGCTGCGAGACAGACTAAACAGGATATTGGCGACCGAGTACTTCACCATGACGCCTGAGCTGCAGACTGTAACATCAGAGATCGCAGTGGGACA
ttccttaac putative branch site
tttttccttaactttg putative PPT
ttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccactggctctcgtgtttttctcttcgtgtttttccttaactttgttcttgtttttctcatagACACTGAGCTGCGAGACAGACTAAACAGGATATTGGCGACCGAGTACTTCACCATGACGCCTGAGCTGCAGACTGTAACATCAGAGATCGCAGTGGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC