1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagcagcgctgtggattgattaggtttacgattgcgttgtgcctggagcagATGATGGGCAATCCCGACCTCCTGCGCATGGCAACCGAGGGAATGAAGAACATCAGGCCCGAGGATTTGCGATTCGCGGCCGAGCAAATGAAAAATATGC
species | Selaginella moellendorffii |
transcript | EFJ23762 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCAGATGAGCCGAATCCCGCCCGCCGAGCTCTTGCGGATGCAGCAACAG ATGATGGGCAATCCCGACCTCCTGCGCATGGCAACCGAGGGAATGAAGAACEST: gi|169059038|gb|FE468183.1|FE468183
genomic: AGCAGATGAGCCGAATCCCGCCCGCCGAGCTCTTGCGGATGCAGCAACAGgtgagcagcg ... cctggagcagATGATGGGCAATCCCGACCTCCTGCGCATGGCAACCGAGGGAATGAAGAAC
EST: AGCAGATGAGCCGAATCCCGCCCGCCGAGCTCTTGCGGATGCAGCAACAG ATGATGGGCAATCCCGACCTCCTGCGCATGGCAACCGAGGGAATGAAGAAC
genomic: AGCAGATGAGCCGAATCCCGCCCGCCGAGCTCTTGCGGATGCAGCAACAGgtgagcagcg ... cctggagcagATGATGGGCAATCCCGACCTCCTGCGCATGGCAACCGAGGGAATGAAGAAC
gtgagcagcgctgtggattgattaggtttacgattgcgttgtgcctggagcagATGATGGGCAATCCCGACCTCCTGCGCATGGCAACCGAGGGAATGAAGAACATCAGGCCCGAGGATTTGCGATTCGCGGCCGAGCAAATGAAAAATATGC
gattgat putative branch site (score: 22)
attgatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagcgctgtggattgattaggtttacgattgcgttgtgcctggagcagATGATGGGCAATCCCGACCTCCTGCGCATGGCAACCGAGGGAATGAAGAACATCAGGCCCGAGGATTTGCGATTCGCGGCCGAGCAAATGAAAAATATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT