1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttcctgactcttcttctgcggcctttgtgaactccaaagactcgccagccaagatgcttcccacatcatgataaaactccacgtcttcgtgttccatcagCTCCAAGTATCTCTGCTGGACGTCTCGCTCGGACCGTCATGAGCAGCGCATCCAGCTCCAAGGAATCTACCGAAAACAAACTGAGACCTGTGCTCTGATT
species | Selaginella moellendorffii |
transcript | EFJ23725 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cagccaagatgcttcccacatcatgataaaactccacgtcttcgtgttccatcagCTCCAAGTATCTCTGCTGGACGTCTCGCTCGGACCGTCATGAGCAGCGCATCCAGCTCCAAGGAATCTACCGAAAACAAACTGAGACCTGTGCTCTGATT
ttccatc CT-rich tract
atgataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctgactcttcttctgcggcctttgtgaactccaaagactcgccagccaagatgcttcccacatcatgataaaactccacgtcttcgtgttccatcagCTCCAAGTATCTCTGCTGGACGTCTCGCTCGGACCGTCATGAGCAGCGCATCCAGCTCCAAGGAATCTACCGAAAACAAACTGAGACCTGTGCTCTGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - tcttctt
- - - - - - - - - - -cctttgt
- - - - - - - - - - - - - - gaactcc
- - - - - - - - - - - - - - -aactcca
- - - - - - - - - - - - - - - - - - - - - cgccagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttcgt