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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaaggatacgtagatccaaggctttttttacgctcgtccacatcctagaacagagcataactcttccacactcgcagGGAAGGACTACCGCAGGACGAGACGAGCGAACGCTTTCTTCTCGCTCTTTCTCTCCATCGGCAATGTGCTGGGATACGCTGCCGGTTCTTACTCCAACTG

Basic information

species Selaginella moellendorffii
transcript EFJ23442
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169048758|gb|FE455264.1|FE455264
EST:     CAACAACACGCTCCAGGGGCCGTGCCGGGCTCTCCTGGCCGATCTATCGG                         GGAAGGACTACCGCAGGACGAGACGAGCGAACGCTTTCTTCTCGCTCTTTC
genomic: CAACAACACGCTCCAGGGGCCGTGCCGGGCTCTCCTGGCCGATCTATCGGgtaagcaaaa ... acactcgcagGGAAGGACTACCGCAGGACGAGACGAGCGAACGCTTTCTTCTCGCTCTTTC
EST: gi|169076464|gb|FE485026.1|FE485026
EST:     CAACAACACGCTCCAGGGGCCGTGCCGGGCTCTCCTGGCCGATCTATCAG                         GGAAGGACTACCGCAGGACGAGACGAGCGAACGCTTTCTTCTCGCTCTTTC
genomic: CAACAACACGCTCCAGGGGCCGTGCCGGGCTCTCCTGGCCGATCTATCGGgtaagcaaaa ... acactcgcagGGAAGGACTACCGCAGGACGAGACGAGCGAACGCTTTCTTCTCGCTCTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttacgctcgtccacatcctagaacagagcataactcttccacactcgcagGGAAGGACTACCGCAGGACGAGACGAGCGAACGCTTTCTTCTCGCTCTTTCTCTCCATCGGCAATGTGCTGGGATACGCTGCCGGTTCTTACTCCAACTG
                                gcataac  putative branch site (score: 3)
 ctcttccac  CT-rich tract