1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagtttttctatcggatcctcgggaacctggatcgacgaacgttgttttcttcttccttggcagACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGAT
species | Selaginella moellendorffii |
transcript | EFJ21599 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGTGCTGGAGGACGTGCCTCACGTCACCGACTGGCTGCCGGACCTTCCG ACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAAEST: gi|70669058|gb|DN837635.1|DN837635
genomic: CGGTGCTGGAGGACGTGCCTCACGTCACCGACTGGCTGCCGGACCTTCCGgtgagttttt ... tccttggcagACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAA
EST: CGGTGCTGGAGGACGTGCCTCACGTCACCGACTGGCTGCCGGACCTTCCG ACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCTGTCAAGCAAEST: gi|169028988|gb|FE438128.1|FE438128
genomic: CGGTGCTGGAGGACGTGCCTCACGTCACCGACTGGCTGCCGGACCTTCCGgtgagttttt ... tccttggcagACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAA
EST: CGGTGCTGGAGGACGTGCCTCACGTCACCGACTGGCTGCCGGACCTTCCG ACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAA
genomic: CGGTGCTGGAGGACGTGCCTCACGTCACCGACTGGCTGCCGGACCTTCCGgtgagttttt ... tccttggcagACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAA
tatcggatcctcgggaacctggatcgacgaacgttgttttcttcttccttggcagACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGAT
cgttgttttcttcttc CT-rich tract
ttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttttctatcggatcctcgggaacctggatcgacgaacgttgttttcttcttccttggcagACGTATGCGAATCCTCTAAAGCACAATCCAGCGTATGTGGCGGTCAAGCAATACTTTGTGGACGAGGACGCCATGGTCGCCAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA