1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtactgtggttcttcccaaagcttggattcgatcaaaagctttggtttttttttcttggattcgatcgaaagctttgtttttctttgtgttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTTGAGAAGCAAGCACGGCTCAACCGTGAGAGAGTTCCCGAGCGCGTCGTC
species | Selaginella moellendorffii |
transcript | EFJ21541 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTEST: gi|169097972|gb|FE498769.1|FE498769
genomic: CTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: CCTCTCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTEST: gi|169041617|gb|FE449045.1|FE449045
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: CCTCTCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTEST: gi|169095390|gb|FE497496.1|FE497496
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: CCTCTCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTEST: gi|169018437|gb|FE427246.1|FE427246
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: TCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTEST: gi|169069871|gb|FE477536.1|FE477536
genomic: TCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG TGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTEST: gi|169061633|gb|FE469420.1|FE469420
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: CCGGAGCTCCAGTCTCGGACGATAACAACAG TGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: CCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
ggtttttttttcttggattcgatcgaaagctttgtttttctttgtgttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTTGAGAAGCAAGCACGGCTCAACCGTGAGAGAGTTCCCGAGCGCGTCGTC
ctttgtttttctttgt CT-rich tract
ttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgtggttcttcccaaagcttggattcgatcaaaagctttggtttttttttcttggattcgatcgaaagctttgtttttctttgtgttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTTTGAGAAGCAAGCACGGCTCAACCGTGAGAGAGTTCCCGAGCGCGTCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG