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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccgaaagtcccagaaatcccagaaagttccactaaaaagttctaatgttatgcctctttctcgatcactgcaaagctaattctaaaatttggattggaatggatgtagAGGCGACACCAAAATCCGTGATGAGGATCATGGGAGTCAAAGGCCTTACTTTGTATCATCTCAAAAGCCACCTTCAG

Basic information

species Selaginella moellendorffii
transcript EFJ21192
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ21192 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S37_226V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagccgaaagtcccagaaatcccagaaagttccactaaaaagttctaatgttatgcctctttctcgatcactgcaaagctaattctaaaatttggattggaatggat--gtagAGGCGACACCAAAATCCGTGATGAGGATCATGGGAGTCAAAGGCCTTACTTTGTATCATCTCAAAAGCCACCTTCAG
       |  | || ||  |      |   ||   |   |   |||| ||    ||   |  || | ||| |     |  ||||||      ||   |  | | |  ||    |||||| ||||||||||| |||||| ||||||||||||| || |  |||||| | || ||| | || ||||| ||||||
-------gggattctcaacatattttg---gtctaatgtaggtgttcaaaaaggat---ttattttagattaagatga--ctaatttctttgttattaacgaactcaattgacagAGGCTACACCAAAATCTGTGATGCGGATCATGGGAGTGAAGGATCTTACTCTATACCATTTGAAGAGCCATCTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttctcgatcactgcaaagctaattctaaaatttggattggaatggatgtagAGGCGACACCAAAATCCGTGATGAGGATCATGGGAGTCAAAGGCCTTACTTTGTATCATCTCAAAAGCCACCTTCAG
                          ttctaaa  putative branch site (score: 2)
                       taattctaaaattt  TA-rich tract