1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatggggggcagcattctatcgctcgattcctgtggcattttctcactccttgcattggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTTTACGTCGAGCCGGAAGCCAAGCTCATGTTCGTCATCCGGATAAGAGG
species | Selaginella moellendorffii |
transcript | EFJ20182 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGCTCATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGCGATCAG GAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTTEST: gi|169114954|gb|FE515903.1|FE515903
genomic: GGCTGATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGTGATCAGgtatgggggg ... ggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTT
EST: GGCTCATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGCGATCAG GAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTTEST: gi|169064613|gb|FE471344.1|FE471344
genomic: GGCTGATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGTGATCAGgtatgggggg ... ggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTT
EST: GGCTCATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGCGATCAG GAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTTEST: gi|169047954|gb|FE455993.1|FE455993
genomic: GGCTGATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGTGATCAGgtatgggggg ... ggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTT
EST: GGCTCATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGCGATCAG GAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTTEST: gi|169044471|gb|FE451082.1|FE451082
genomic: GGCTGATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGTGATCAGgtatgggggg ... ggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTT
EST: GGCTCATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGCGATCAG GAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTT
genomic: GGCTGATTTTCAAGCGCGCCGAGCAGTATGTCAAGGAGTACCGTGATCAGgtatgggggg ... ggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTT
cattctatcgctcgattcctgtggcattttctcactccttgcattggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTTTACGTCGAGCCGGAAGCCAAGCTCATGTTCGTCATCCGGATAAGAGG
ttctcac putative branch site (score: 41)
tctcc putative PPT
attttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggggggcagcattctatcgctcgattcctgtggcattttctcactccttgcattggatctccagGAGCAGGATCTGATTCGGCTCAAGAGGGAGGCCAAGCGCAAAGGAGGCTTTTACGTCGAGCCGGAAGCCAAGCTCATGTTCGTCATCCGGATAAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG