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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgccttctttctgtatcagctgtgatacttatgttgcctgctacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT

Basic information

species Selaginella moellendorffii
transcript EFJ20162
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20162 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 13
----------------------gtatgccttctttctgtatcagct-gtgat-acttatgttg---cctgctacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT-----------
                      ||   | | ||  ||  |   |||  ||||   || ||||     ||  | |||||| || ||||||||||||||||||||||| ||  | |||||||||||  ||||  | ||||| || | |||||| | | | | |  |||           
gtttgtaactacactgttcttagtgctcgtgctcactacaggtgcttatgattgattttgtttaattcttttccagTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAA-ATAAGATAATTTATGAAGATGGT

upper sequence: EFJ20162 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G340527_T01 (Zea mays), 3'ss of exon 13
---------------------------------------gtatgccttctttctgtatcagctgt-gatacttatgttgcctgctacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT----------
                                        | || |||   | || ||      | |||  || | ||   |  | |||||| |||||||||||||||||||||||||| ||  | |||||||||||  |||| || ||||| ||   |||||| |  ||| |    |           
gtctgtaacaatactctttacttctttagagtgtttacattttgacttacatgtgcatatatgattgatctttctatt-tttattccagTGGGGAATTTGTTGTGGTTAACAAGCATCTTCTTCATGATTTGACTGAAATGGGCATTTGGACTCCTACTCTGAAAAACCAGATAATATATGATGATGGT

upper sequence: EFJ20162 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
---------------------------------------gtatgccttctttctgtatcagctgt-gatacttatgttgcctgctacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT----------
                                        | ||   |   | || |   |   |  ||  || | ||   || | |||||| |||||||||||||| ||||||||||| ||  | ||| |||||||  |||| || ||||| ||   | |||| |  ||| |    |           
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT

upper sequence: EFJ20162 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 15
----------------------------------gtatgccttctttctgtatcagctgtgatacttatgttgcctgc--tacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT
                                   | ||   ||||  || |||   | ||||  |||   ||  ||   | ||||||||||||||||||||| ||||||||| | ||  | || |||||  | |   |||||   | |     |||||  ||            
gttttaaggctcattgccgtaccatcttattattttttgatatcttattg-atctattttgattgtta-actgtttgtctttcagtggtgaatttgttgtggtgaacaagCATTTACTTCATGACTTGACACAATCAAGAATA---ATATTATCTCTGAGGATG-----------

upper sequence: EFJ20162 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 13
-----------------------------------------gtatgccttctttctgtatcagctgtgatacttatgttgcctgctacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT----------
                                         |||    || || |  | | ||         |  |  |  ||    ||||||||||||||||||||| ||||||||||| ||  | || || |||||  ||||  | ||| ||||   ||| || |  ||| |   ||           
gtttgttttgctaccctaacctgttcattttctaagatttagtac-ttttgttgccatctaagtctcctctttccttgtttctttgtcagTGGTGAATTTGTTGTGGTAAACAAGCATCTTCTTCATGACTTAACTGAGATGGGTCTTTGGTCACCTACTCTTAAGAACCAGATAATTTATGAGAATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatgccttctttctgtatcagctgtgatacttatgttgcctgctacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT
                                            atacttat  TA-rich tract