1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcttggagtttgcgtagacatgatgtttccttctttccactcgttttttcgctatcttttgggatggtttacgtatggttcctttttttttcaggacagTCCGATTCGATCACTTATAGAGGCCGGAATTGACGCGAACAGGAGGAGCGATGTGAGGCTTTACTATGGAGCCAGGAGTCTTGAGAGGATGGCATATCGG
species | Selaginella moellendorffii |
transcript | EFJ19233 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGAAGTTCCAGACTGTGCTGTTCTTCGCGACTGGCTCTGGTATCAG TCCGATTCGATCACTTATAGAGGCCGGAATTGACGCGAACAGGAGGAGCGAEST: gi|169034057|gb|FE442791.1|FE442791
genomic: CCAGAGAAGTTCCAGACTGTGCTGTTCTTCGCGACTGGCTCTGGTATCAGgtaacgtgat ... ttcaggacagTCCGATTCGATCACTTATAGAGGCCGGAATTGACGCGAACAGGAGGAGCGA
EST: CCAGAGAAGTTCCAGACTGTGCTGTTCTTCGCGACTGGCTCTGGTATCAG TCCGATTCGATCACTTATAGAGGCCGGAATTGACGCGAACAGGAGGAGCGA
genomic: CCAGAGAAGTTCCAGACTGTGCTGTTCTTCGCGACTGGCTCTGGTATCAGgtaacgtgat ... ttcaggacagTCCGATTCGATCACTTATAGAGGCCGGAATTGACGCGAACAGGAGGAGCGA
tttttcgctatcttttgggatggtttacgtatggttcctttttttttcaggacagTCCGATTCGATCACTTATAGAGGCCGGAATTGACGCGAACAGGAGGAGCGATGTGAGGCTTTACTATGGAGCCAGGAGTCTTGAGAGGATGGCATATCGG
tggttccttttttttt CT-rich tract
tttttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttggagtttgcgtagacatgatgtttccttctttccactcgttttttcgctatcttttgggatggtttacgtatggttcctttttttttcaggacagTCCGATTCGATCACTTATAGAGGCCGGAATTGACGCGAACAGGAGGAGCGATGTGAGGCTTTACTATGGAGCCAGGAGTCTTGAGAGGATGGCATATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
ttcttgg
- - - - -tttgcgt
- - - - - - - - - - - - - tttcctt
- - - - - - - - - - - - - - - - -ctttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttttt