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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattattcaagttttataagttgcttgaaacccatgtgttttcgtttcttctaaatagGCTCTGGTACTCCAAGAGCTGTAGGTGTTCAAGTCATGGCCCGTTTATCCGGAAAAACGTTTGCTATTCTTCTCCGGAATTCATCCAAAAGTGAAGTGAT

Basic information

species Selaginella moellendorffii
transcript EFJ19108
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169031876|gb|FE438509.1|FE438509
EST:     CAACGTCCAAGTCGTGATAAACGCTCTTGTTCAGAAGATCATCTTCTCAG                         GCTCTGGTACTCCAAGAGCTGTAGGTGTTCAAGTCATGGCCCGTTTATCCG
genomic: CAACGTCCAAGTCGTGATAAACGCTCTTGTTCAGAAGATCATCTTCTCAGgtaattattc ... ttctaaatagGCTCTGGTACTCCAAGAGCTGTAGGTGTTCAAGTCATGGCCCGTTTATCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcaagttttataagttgcttgaaacccatgtgttttcgtttcttctaaatagGCTCTGGTACTCCAAGAGCTGTAGGTGTTCAAGTCATGGCCCGTTTATCCGGAAAAACGTTTGCTATTCTTCTCCGGAATTCATCCAAAAGTGAAGTGAT
                                 tgttttcgtttcttct  CT-rich tract
     aagttttataagtt  TA-rich tract