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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggaaagattttctttgccttgcacggtgatcaaagccaagtttttctcgtctagATGATTGGAATCTGGAGCGTGAGTCTTTGGGAGCAAATGGGAAAGCCCAGGAAACTCCAACTTGTAGAACTAGGACCGGGTCGAGGTACGCTCATGCAGG

Basic information

species Selaginella moellendorffii
transcript EFJ18779
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ18779 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT3G28700.2 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------------gtattggaaagatt-ttctttgccttgcacggtgatcaaagccaagtttttct----cgt----ctagATGATTGGAATCTGGAGCGTGAGTCTTTGGGAGCAAATGGGAAAGCCCAGGAAACTCCAACTTGTAGAACTAGGACCGGGTCGAGGTACGCTCATGCAGG
                                   | ||| |     |  |||| ||  |      | |||  |||    |||  | |     ||     |||||||||||  | |||| |||| ||||||||||||||||||||| |||   ||   |  | ||||| || ||||| || ||||| || || ||||||   |
gtgatttacttggcgtttgttgatttgagagttatgcatttgtgttttggttctatgtttgagcttgagattgaagttttgttactttgtgttgtgatcttagATGATTGGTGTTTGGACCGTGTGTCTTTGGGAGCAAATGGGAAGGCCAGAGAGGGTTAATCTTGTTGAGCTAGGTCCAGGTCGGGGAACACTCATGGCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggaaagattttctttgccttgcacggtgatcaaagccaagtttttctcgtctagATGATTGGAATCTGGAGCGTGAGTCTTTGGGAGCAAATGGGAAAGCCCAGGAAACTCCAACTTGTAGAACTAGGACCGGGTCGAGGTACGCTCATGCAGG
                                         tttttctcgtct  CT-rich tract
       attttcttt  TA-rich tract