1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gcttcgattcctccactttctgtcaaaaagaaaccttcgttcttcttcttccttcgttgtttgtcggaacttacttgtttttctcttttcttctccacagGTCGCACAGGTGCTTTTGACGCTGCCATACTCTTTCTCGCAGCTGGGCATTGTGTGGGGGGTCACCTTCCAAGTGTTTTACGGGCTTTTGGGCTCCTGGA
species | Selaginella moellendorffii |
transcript | EFJ18760 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttcttccttcgttgtttgtcggaacttacttgtttttctcttttcttctccacagGTCGCACAGGTGCTTTTGACGCTGCCATACTCTTTCTCGCAGCTGGGCATTGTGTGGGGGGTCACCTTCCAAGTGTTTTACGGGCTTTTGGGCTCCTGGA
aacttac putative branch site (score: 17)
cttacttgtttttctc CT-rich tract
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttcgattcctccactttctgtcaaaaagaaaccttcgttcttcttcttccttcgttgtttgtcggaacttacttgtttttctcttttcttctccacagGTCGCACAGGTGCTTTTGACGCTGCCATACTCTTTCTCGCAGCTGGGCATTGTGTGGGGGGTCACCTTCCAAGTGTTTTACGGGCTTTTGGGCTCCTGGA
- - - -ttcctcc
- - - - - - - - tttctgt
- - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - -ccttcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttctc