1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagaagaaaaccatcccgagtgctcgaccaaaatcgcattttttcgcgtcgccacgagtggatctggccctgccgagatccatcctgggatttgtctttcgagatgtcgaggctcacttcttttcatttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATCTCGGACGAGCTCATGCTGGATGGAAATCCTCGTCTCAATCTCGCCTCC
species | Selaginella moellendorffii |
transcript | EFJ18071 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169025137|gb|FE433892.1|FE433892
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169031371|gb|FE441187.1|FE441187
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: CTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169050085|gb|FE460153.1|FE460153
genomic: CTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169042692|gb|FE451511.1|FE451511
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169019233|gb|FE428146.1|FE428146
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169063238|gb|FE472696.1|FE472696
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169105456|gb|FE504062.1|FE504062
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169108572|gb|FE510787.1|FE510787
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169040842|gb|FE447893.1|FE447893
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169072350|gb|FE480249.1|FE480249
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169096776|gb|FE499792.1|FE499792
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACGCGTAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169030667|gb|FE439573.1|FE439573
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169034082|gb|FE442803.1|FE442803
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAA GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATEST: gi|169103423|gb|FE508895.1|FE508895
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
EST: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCGTCGGTATCAAAgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTAT
catcctgggatttgtctttcgagatgtcgaggctcacttcttttcatttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATCTCGGACGAGCTCATGCTGGATGGAAATCCTCGTCTCAATCTCGCCTCC
ggctcac putative branch site (score: 52)
ctcacttcttttcatt CT-rich tract
ttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaagaaaaccatcccgagtgctcgaccaaaatcgcattttttcgcgtcgccacgagtggatctggccctgccgagatccatcctgggatttgtctttcgagatgtcgaggctcacttcttttcatttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCTTATCAGATTATCTCGGACGAGCTCATGCTGGATGGAAATCCTCGTCTCAATCTCGCCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA