1 5' 3' | 2 5' 3' | 3 5' 3' |
...agctgaggtcagagacttgtctgtctccttagtctaattcttggcaaagagctagactaaacaataaacagtgttagatttgttgaatgagcccctccagGATTCAGTTTGATATCGGCCTCCCAAGAAGAAACCACCACGTACGGCATCCCAAATAGCTCCCTTTTGCTAAGCAGTAAACCCAATTACGTTGGAAGCAA
species | Selaginella moellendorffii |
transcript | EFJ17273 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aaagagctagactaaacaataaacagtgttagatttgttgaatgagcccctccagGATTCAGTTTGATATCGGCCTCCCAAGAAGAAACCACCACGTACGGCATCCCAAATAGCTCCCTTTTGCTAAGCAGTAAACCCAATTACGTTGGAAGCAA
gactaaa putative branch site (score: 2)
cccctcc putative PPT
taaacaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctgaggtcagagacttgtctgtctccttagtctaattcttggcaaagagctagactaaacaataaacagtgttagatttgttgaatgagcccctccagGATTCAGTTTGATATCGGCCTCCCAAGAAGAAACCACCACGTACGGCATCCCAAATAGCTCCCTTTTGCTAAGCAGTAAACCCAATTACGTTGGAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - -cttgtct
- - - - - - - - - - - -tctcctt
- - - - - - - - - - - - - - - - - - -ttcttgg
- - - - - - - - - - - - - - - - - - - - - - - - gagctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg