1 5' 3' |
...cgtgagtagaattcaaatcgatctttgcttaccatgcttgataagactgccaaacttatattcgtttctgacgcgcgttctatctttttcctcgtgacagATCGCTGAGCTCGTCTCTCGCGCACTTCCACTCCGCCTGGTCGGTGAGGACGATCCCCGCGTGAAGGAATTCGAGGAGCTCCACGACCGTAAGGAATCCA
species | Selaginella moellendorffii |
transcript | EFJ17249 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
actgccaaacttatattcgtttctgacgcgcgttctatctttttcctcgtgacagATCGCTGAGCTCGTCTCTCGCGCACTTCCACTCCGCCTGGTCGGTGAGGACGATCCCCGCGTGAAGGAATTCGAGGAGCTCCACGACCGTAAGGAATCCA
ttctgac putative branch site (score: 3)
cgttctatctttttcc putative PPT
aaacttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgtgagtagaattcaaatcgatctttgcttaccatgcttgataagactgccaaacttatattcgtttctgacgcgcgttctatctttttcctcgtgacagATCGCTGAGCTCGTCTCTCGCGCACTTCCACTCCGCCTGGTCGGTGAGGACGATCCCCGCGTGAAGGAATTCGAGGAGCTCCACGACCGTAAGGAATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - agtagaa
- - - - - - - - atcgatc
- - - - - - - - - - - -tttgctt
- - - - - - - - - - - - - - - - catgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcgttt