1 5' 3' | 2 5' 3' | 3 5' 3' |
...tggatagattgagtgtcgtaaaaatcctcttttggtaagaggttttgcttctttcgattgatgaacagttttggatttggaactcactctccacctgcagATACATCCGGTACTTATGGTCATTGGATTCATCTTCGTCTCCAGTGAGG
species | Selaginella moellendorffii |
transcript | EFJ17216 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGGGGAGGTCTCAATTGGAATGCGGTCAATAAGAACCTCGTCTTCAAT ATACATCCGGTACTTATGGTCATTGGATTCACCAACGTCTCCAGTGAGG
genomic: ACAGGGGAGGTCTCAATTGGAATGCGGTCAATAAGAACCTCGTCTTCAATgtaagcatct ... ccacctgcagATACATCCGGTACTTATGGTCATTGGATTCATCTTCGTCTCCAGTGAGG
tgcttctttcgattgatgaacagttttggatttggaactcactctccacctgcagATACATCCGGTACTTATGGTCATTGGATTCATCTTCGTCTCCAGTGAGG
aactcac putative branch site (score: 17)
ctcactctccacct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatagattgagtgtcgtaaaaatcctcttttggtaagaggttttgcttctttcgattgatgaacagttttggatttggaactcactctccacctgcagATACATCCGGTACTTATGGTCATTGGATTCATCTTCGTCTCCAGTGAGG
- - - - - - - - - - - - tcctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaactc