1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagccctgctcgagagttcttctacctttgtctcaattctctggtttgtgattcttgcagAGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTGTTCCATGTAGCGTACCCGAGTGCTCCAGAAGCAACGCGGTCGGAGTTGA
species | Selaginella moellendorffii |
transcript | EFJ15458 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAG AGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTGEST: gi|169030962|gb|FE439829.1|FE439829
genomic: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAGgtaagccctg ... attcttgcagAGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTG
EST: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAG AGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTGEST: gi|169030963|gb|FE439830.1|FE439830
genomic: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAGgtaagccctg ... attcttgcagAGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTG
EST: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAG AGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTGEST: gi|169028896|gb|FE438595.1|FE438595
genomic: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAGgtaagccctg ... attcttgcagAGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTG
EST: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAG AGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTG
genomic: CTCAGATGAAAGAAAAGGACTTGGTGGATTGGTTTATCCCTCTCGTCAAGgtaagccctg ... attcttgcagAGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTG
ctgctcgagagttcttctacctttgtctcaattctctggtttgtgattcttgcagAGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTGTTCCATGTAGCGTACCCGAGTGCTCCAGAAGCAACGCGGTCGGAGTTGA
ttcttgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccctgctcgagagttcttctacctttgtctcaattctctggtttgtgattcttgcagAGACTCGGGGCGGACGAGTGGTTTACCTCTCGCATCTCAGCTTGCTGCTTGTTCCATGTAGCGTACCCGAGTGCTCCAGAAGCAACGCGGTCGGAGTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA