Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcagaaaaatctctttttcttgctgctcttcctgtgaagtcaagttcgaaaatgctttttttttcctttttttctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA

Basic information

species Selaginella moellendorffii
transcript EFJ15151
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15151 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv06s0009g03740.t01 (Vitis vinifera), 3'ss of exon 1
gtactcagaaaaatctctttttcttgctgctcttc-ctgtgaagtcaagttcgaaaat--gctttttttttccttt---------------ttttctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA
   | ||  | || ||||  |||| | |   |||  |||| |    ||| | || |||   || ||  |||   ||               | |  |  |||||| ||||| || |||||||||||||| || |||||||| || |||||||||   | ||| || ||||   | || || || ||  |||| |||||||| ||
---cacaatataa-ctctccttctggttctccttttctgtcattggaagattgataatttactcttcatttatgttacatattgttgttgctgtcttggctcagGTACTGGTGCATGGGAGAGTGCACTTACAAACACATTGTCTCCTGGAGATCGAACTGTATCATTCCTGATTGGGCAATTCAGTTTGCTGTGGATCGACCA

upper sequence: EFJ15151 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S19_25V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------gtactcagaaaaatctctttttcttgctgctcttcctgtgaagtcaagttcgaaaatgctttttttttcctttttttctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA
                   ||    ||| | |   |  |   |   ||| |      |   |    ||   | | |    || |||   | ||  |||    ||| |||||||| |||||||||||  |||| || ||||| |||||||| || |||||| |||| |||||||||||||| ||||| || |||||||| || ||
caggcttattttgtcatgctagctcgaagactagatggtaaatttggctatcttcccgcttttcctttgacagacgtgggttgtttgaatgttgcctc----agGCACTGGAGCATGGGAGAGTGCCTTGACGAATACATTGTCACCTGGGGACAAGATTATCTCCTTCCGTCTGGGACAATTTAGTCTCCTCTGGATTGACCA

upper sequence: EFJ15151 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S369_6V6.1 (Physcomitrella patens), 3'ss of exon 1
------------------gtactcagaaaaatctctttttcttgctgctcttcctgtgaagtcaagttcgaaaatgctttttttttcctttttttctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA
                   ||||  || || | |       ||  |  || |||||    | |   | || | |||  ||  |    |   ||||   | ||||| |||||||| |||||||||||  |||| |||||| | ||||| || || |||||  |||| ||||| |||||||| || ||||| |||||||| || ||
cgcaaaaattgtgtcgtgttactgtgataatttttgaaagtttcgttgtcgtcctgcatcgactcttacggatatgggttgat----cgaatttttcgtgtcagGTACTGGAGCATGGGAGAGTGCCTTGACGAACACACTGTCACCCGGGGACAAGATCATCTCCTTCCGGCTGGGACAATTCAGCCTTCTCTGGATTGACCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169019655|gb|FE427991.1|FE427991
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|70670195|gb|DN838772.1|DN838772
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169102784|gb|FE508100.1|FE508100
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169044858|gb|FE451963.1|FE451963
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169073069|gb|FE483719.1|FE483719
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169025530|gb|FE435000.1|FE435000
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169113195|gb|FE514441.1|FE514441
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169112652|gb|FE509425.1|FE509425
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169030414|gb|FE438670.1|FE438670
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169077709|gb|FE485387.1|FE485387
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169052103|gb|FE463224.1|FE463224
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169112725|gb|FE515101.1|FE515101
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169107738|gb|FE511461.1|FE511461
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169075271|gb|FE483529.1|FE483529
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169103253|gb|FE505631.1|FE505631
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169054673|gb|FE461613.1|FE461613
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169103671|gb|FE506868.1|FE506868
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169075996|gb|FE482863.1|FE482863
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169105005|gb|FE505886.1|FE505886
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169070622|gb|FE478846.1|FE478846
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169064861|gb|FE475557.1|FE475557
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169103588|gb|FE508956.1|FE508956
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169038739|gb|FE447467.1|FE447467
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169066515|gb|FE474101.1|FE474101
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169098473|gb|FE500167.1|FE500167
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169044387|gb|FE453325.1|FE453325
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169069696|gb|FE477036.1|FE477036
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169060858|gb|FE469253.1|FE469253
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169050537|gb|FE458903.1|FE458903
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169113218|gb|FE515192.1|FE515192
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169110100|gb|FE511586.1|FE511586
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169064843|gb|FE475539.1|FE475539
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169062273|gb|FE470463.1|FE470463
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169109129|gb|FE511331.1|FE511331
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169039552|gb|FE449942.1|FE449942
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169087240|gb|FE495722.1|FE495722
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169114564|gb|FE516634.1|FE516634
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169071829|gb|FE478116.1|FE478116
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169112804|gb|FE515180.1|FE515180
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169062305|gb|FE470495.1|FE470495
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169093295|gb|FE492677.1|FE492677
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|70670215|gb|DN838792.1|DN838792
EST:     GGATCTGTTTAAGACCGAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169059525|gb|FE468551.1|FE468551
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169037463|gb|FE445528.1|FE445528
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169070584|gb|FE479861.1|FE479861
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169113227|gb|FE515500.1|FE515500
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169029590|gb|FE436780.1|FE436780
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169101528|gb|FE501501.1|FE501501
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169054642|gb|FE461582.1|FE461582
EST:     GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169094121|gb|FE496101.1|FE496101
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169103111|gb|FE506308.1|FE506308
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169055157|gb|FE461044.1|FE461044
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
EST: gi|169046798|gb|FE455033.1|FE455033
EST:     GGATCTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAG                         GAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA
genomic: GGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 134

CGCTCTCCAGCGTTTGCTACGCTCTCCAAATCCGTGCTGGACGGTGTCAAGGATTTGTTTAAGACCAAGACTGCCACTTCGTTCATCTTTCCAACAACAGgtactcagaa ... tctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcctgtgaagtcaagttcgaaaatgctttttttttcctttttttctctctcagGAACTGGAGCTTGGGAGAGTGCACTGACCAACACATTATCACCTGGAGATAAGATTGTCTCGTTCCGTCTGGGACAGTTTAGCCTGCTCTGGATCGATCA
                         tgctttttttttcctt  CT-rich tract
                            tttttttttccttttt  TA-rich tract