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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttattgaagttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG

Basic information

species Selaginella moellendorffii
transcript EFJ15078
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15078 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 1
---------------------------------gta-cgttattgaagttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG
                                 |||   ||    || |  |  |||  |  || || | |     |  |   |  |  |    |||||||||||||| || || ||| | ||| | ||||||||||| ||||||||||| |||||||  ||  |    ||| || |   ||| || ||| |  |  |||
attagtggaattgatgttataagatgccgaatagtaatattcactaactagtgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG

upper sequence: EFJ15078 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------gtacgttattga--agttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG
                                   |  | ||||  |  ||   |  |||      ||   | |    | |||||||| |||     | | ||||||||||||| || ||| | ||| | || |||||||| ||||||||||||||||| || ||  ||   ||| || |   ||| || ||| |  | || |
tagtagattctgcatatgcaggaagacttatatgtgggctttataaagcaggaatactttaattcctcttctacatgatccttctcattttct---gtgtcagGATGGAGAATCGGGATGGAGTAGCCTTCATAGGGCTCTGCATTTTGGTCACCTTGCTGTGGCAAGTATTCTTCTTCAGTCTGGTGCATCTATTACATTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG
                       ttctcac  putative branch site (score: 2)
                                              aaatttta  TA-rich tract