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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttattgaagttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG

Basic information

species Selaginella moellendorffii
transcript EFJ15078
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15078 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA19G29100.1 (Glycine max), 3'ss of exon 1
---------------------------------gta-cgttattgaagttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG
||| || || | | ||| | || || | | | | | | | |||||||||||||| || || ||| | ||| | ||||||||||| ||||||||||| ||||||| || | ||| || | ||| || ||| | | |||
attagtggaattgatgttataagatgccgaatagtaatattcactaactagtgctttatctctttgaatccattaattctgaaacttgtgttgtttttagGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACACTGG

upper sequence: EFJ15078 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------------gtacgttattga--agttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG
| | |||| | || | ||| || | | | |||||||| ||| | | ||||||||||||| || ||| | ||| | || |||||||| ||||||||||||||||| || || || ||| || | ||| || ||| | | || |
tagtagattctgcatatgcaggaagacttatatgtgggctttataaagcaggaatactttaattcctcttctacatgatccttctcattttct---gtgtcagGATGGAGAATCGGGATGGAGTAGCCTTCATAGGGCTCTGCATTTTGGTCACCTTGCTGTGGCAAGTATTCTTCTTCAGTCTGGTGCATCTATTACATTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttctttttttgcctttcgatttctcacttcttctcatgttcgcaaattttagGATGGAGAATCCGGCTGGGGAAGCTTGCACAGGGCTCTACATTTTGGTCACCTTGCCGTTGCCGGTGCGCTTGTTGACGGTGGCGCTTCTGTGTCCTTGG
                       ttctcac  putative branch site (score: 2)
 aaatttta  TA-rich tract