1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgatccttgactaaactttagcttttgccttctccgattgtgcgattgcttgtagctgttttgtttactaatggctttttactgctcaatcgcttgcagCCAGGCATGTTCTCTGCGAGAAACAGGGACGGATCAACGACGCCTACAAGAAGCTCCAGGACGGATGGCTAAACAACGGCGACAAAGTCCCACCGGCGGA
species | Selaginella moellendorffii |
transcript | EFJ15020 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
attgcttgtagctgttttgtttactaatggctttttactgctcaatcgcttgcagCCAGGCATGTTCTCTGCGAGAAACAGGGACGGATCAACGACGCCTACAAGAAGCTCCAGGACGGATGGCTAAACAACGGCGACAAAGTCCCACCGGCGGA
tactaat putative branch site (score: 9)
ttttgtttactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatccttgactaaactttagcttttgccttctccgattgtgcgattgcttgtagctgttttgtttactaatggctttttactgctcaatcgcttgcagCCAGGCATGTTCTCTGCGAGAAACAGGGACGGATCAACGACGCCTACAAGAAGCTCCAGGACGGATGGCTAAACAACGGCGACAAAGTCCCACCGGCGGA
- -atccttg
- - - - - - - - - ttagctt
- - - - - - - - - - - - - - ccttctc
- - - - - - - - - - - - - - - - - - - - - - - ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt