Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
Basic information
species | Selaginella moellendorffii |
transcript | EFJ14420 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os11g06890.2 (Oryza sativa), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattc-cccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| || |||| ||||| | || || | | | | ||| ||| | |||| ||| | ||||||||||||| || || || || || || ||||| || || || ||||| ||||||||||||||||| ||||||||||||||||| || |||||||| |||||
---------------------------------------------------------------------------------ccga--ttggagatcggatttgtggggaaaaaaagttgggagctttggattctgt--tcttgatggggggatttgcttatttgctttcattcgatctgttgcagGCATGGGTGCGGCGTACGGGACGGCGAAGAGCGGCGTCGGCGTGGCGTCCATGGGCGTGATGCGCCCGGAGCTCGTGATGAAGTCCATCGTGCCCGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: LOC_Os01g73130.1 (Oryza sativa), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | | | | || |||| ||| | | | ||| ||| |||| | | ||| | |||||||||||||| || || || || || || ||| || || || ||||| |||||| ||||||||||||||||| |||||||| ||||||||||| |||||
---------------------------------------------------------------------------------agaaaaaaagatcgtaaaaa-gctcgatcaaacgatcgatctgcaa--gtttctgcattacgaattacgaattgatggatgaaatttggttataattttgcagGCATGGGGGCGGCGTACGGGACGGCTCGGAGCGGCGTCGGGGTGGCGCACATGGGGGTGATGCGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcg-cgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | | | | | | | ||| ||| |||| | | | || | | ||| | | | | || | || || | |||||||||||| || || || || ||||| ||||| || || || ||||| || ||||| |||||||||||||||||||| ||||| || |||||||| |||||
-------------------------------------------------------------------------------gatttggtccga-tcgggtgtgggatttcagaaatcgacagccttttcccg--tcagacaggcaggtcctgac-tacgctgttcttttgcttgatc--cgatgcagGCATGGGCGCAGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgc--gcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | || | | | || ||| |||| | ||| | ||| | || | | | | | | || | || || | ||||||||||| || || || || ||||| ||||| || || || ||||| || ||||| |||||||||||||||||||| ||||| || |||||||| |||||
-----------------------------------------------------------------------------tggtccgatcgggtgtcagtctgtcggattccagaaagcggtgggctt-------tttcggtcgggcagttgctgactaggctgttattttgcttgatc--cggcgcagGCATGGGCGCCGCGTACGGGACCGCGAAGAGCGGCGTCGGCGTGGCGTCGATGGGTGTGATGCGGCCGGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| || ||||| ||||| | | ||| | | | || | ||| | | || || || ||| | | |||| | | | ||||||||||| || || || || || || |||||||| || || ||||| |||||||| || ||||| || |||||||| ||||| || |||||||| |||||
-------------------------------------------------------------------------------gagagaatttgggt--tggatccatgtggctgggacgtgtgagggcga-aatttttggtggtgaatgacatgatctccc-tctgtgtatgtg-tgtggctcgcagGCATGGGGGCGGCGTACGGGACAGCCAAGAGTGGCGTCGGCGTGGCGTCCATGGGTGTCATGCGCCCAGAGCTCGTCATGAAGTCCATCGTGCCCGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA14G23990.1 (Glycine max), 3'ss of exon 1
----gtaagttcttgcctctcaccgccatggctgga----ctggatctagggttgtggtgcgtgtctcggctgc--gcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccaca-atcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | | | |||| | | | | | || || | | | | || | | | | | || ||| || | || || ||| ||| | || ||| || || | | | ||| | | | || | | | | | || | ||| |||||||| || || ||||| ||||||||||| || || ||||| || |||||||||||| |||||||||| |||||||| ||||||||||| |||||
gttcgccactctctctatctctctctttttgtttataattttttatttaatttaacgata-acaacaatactactaataataataccaagctctagcgtgagttattgaa--aactttctgttatctgtctttgttacggattaaaaaaatatgattt---attccgtggcctttatttttattatgattggtagGTATGGGAGCGGCGTACGGAACGGCAAAGAGTGGGGTGGGGGTGGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA13G03470.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgcc--ttcctgcgcgatttccttgccacaatcccgagatttc----gatcccaaaattccccattttct---tatggaattttct---ttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
|||| | ||||| | | | | || | | | | | ||| | | || || | | | || | || || | || || | |||| | ||| ||||| ||| | | | | ||||| | | | ||| |||||||| || |||||||| || |||||||| || || ||||| || ||||| |||||| |||||||||| |||||||| ||||||||||| |||||
----gttcgtcactctctttttatttgtaaaattttattcaatataacgataacaataataataata--atattagggt-ctagatctatcgtagttggttgaacagttattgtaaaaacctttttgtacctgtcttcgattgctacagattaaaaaatgatttattctgtggctgttttattttatgattggtagGTATGGGAGCGGCGTATGGAACGGCGAAGAGTGGGGTGGGGGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATCGTGCCGGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA16G24220.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | ||| | || | ||| || | | |||| | || || | | | | || | ||| |||| |||||||| || || |||||||| ||||| || || || || || || |||||||||||| |||||||||| |||||||||||||||||||| || ||
-----------------------------------------------------------------------------------gtaactaactcatcaaatcaaagagtttttttttttttttttacaatttccgaaaccggcgtcgttttatctgaaaccgtgtgtcgtttttgttttttcagGTATGGGAGCGGCGTACGGAACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA04G00950.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
|| | || | | ||| | || || || || | | || ||| || | || | | ||||| | || | | || ||| ||||||||||||||||| || |||||||||||||| || ||||| |||||||| |||||| | || ||||| |||||||| || || || || || ||
----------------------------------------------------------------------cactcatgtgaaagtgattgatcgatcgaatcttaatctta---gggttgtttgaagtgat---aaaatctg-----tgaggaatttcatttgtatttgaa---ctgttgatagGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCCATGGGTGTGATGAGACCTGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA02G05630.2 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgcctt-cctgcgcgatttccttgccacaat-cccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | | || | | | | ||| ||| | || | ||||| | || || | | | | || | ||| |||| ||||| || || || || ||||| ||||| || || || || || || |||||||||||| |||||||||| |||||||||||||||||||| || ||
---------------------------------------------------------------------------------------gtaactaactaactcatcaaatcaaagagttttttttgtctcatttcccgaaaccgtcgtcgttttatcttaaaccgtgtgtcgtttttgttttttcagGTATGGGCGCGGCGTACGGCACCGCGAAGAGCGGCGTCGGGGTTGCGTCGATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATCGTGCCGGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA11G11760.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
|||| | | | | | | | | || ||| | | | | | |||| | | ||| | ||| || | | | || ||| ||||||||||||||||| || || |||||||| ||||| ||||| || ||||| |||||| | || ||||| |||||||| || || || || || ||
---------------------------------------------------------------------------ttatgcgtatatataaagaaagacaaagaaattcagagc---ttcttcgttagctttgcattttttctgt----agatttatc--tttaatactaattgatggatgaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTTGGCGTGGCTTCGATGGGTGTGATGAGACCAGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA12G04090.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | | | | | | | | | |||| | |||| | || |||||| ||| || | ||| | | | | | | | ||| ||||||||||||||||| || || |||||||| || || ||||| || ||||| |||||| | |||||||| |||||||| || || || || || ||
----------------------------------------------------------------------------tgtatataaagaaagaaaaagaaattctgagcttcttcgatagctttgc-attttctgtagattt--atctttaa--tatgaattgttt---gaactgatggaggaagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: GLYMA06G00980.1 (Glycine max), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttcttt-----gcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| || || | | | || |||| || |||| | || || | | || | |||||||| ||| ||| ||||||||||||||||| || || |||||||| || || ||||| |||||||| || ||| | || ||||| |||||||| ||||| || || || ||
------------------------------------------------------------------------------------aatttca--cacgtgtgaaagtgattgatcgatcgaatttt---aatcttagggttgtttgtttgaattgataaaaatttgtgaggaattttattttgttgatagGTATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCCATGGGTGTAATGAGACCTGAGCTGGTGATGAAGTCGATTGTTCCTGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| || | || | || |||| | | | | || | | ||| | | ||||| || | ||| | | || || ||| | ||| ||||||||||| || || || |||||||||||||| ||||||||||| ||||| |||||| |||||||| | |||||||| || || || ||||| ||
------------------------------------------------------------aattatgctttttcttcatatcgaagg------catg---ttgattacttgtgtaa-------accatagtt---agattgtgaccttaaagagtgt-gtatctttgtgttattaaca----agGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT4G34720.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | ||| | || | |||| ||| || | | ||| || | || | || | | | ||| | || | || | || || || ||| ||||||||||| |||||||||||||||||||||||||| ||||| || ||||| || ||| | || ||| | ||||||||||| || || || || ||
--------------------------------------------------------------------gattctcttgtgcattc-ctcgaattttgga---acctcattgggtgctttatatg--atcatac-gaaaccatgtt----gaatccttggattgc--attggatgttatt---agGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTGGCTTCTATGGGAGTTATGAGACCTGAGTTGGTGATGAAATCTATTGTCCCTGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: AT2G16510.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
|| || ||| | || | | || | || | || | ||| | ||||| || || ||| | ||||| || ||| ||||||||||| |||||||| ||||||||||||||||| ||||| || ||||| |||||| | || ||| | || ||||| || || || || |||||
-----------------------------------------------------------------------------attagtgttcttagatcagaatctggattttaggtattgatttgtgattgtgattggg-----tcgggcgtaaaatgag--atgttgttactggattttggttttagGTATGGGAGCTGCTTATGGAACAGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGAGTGATGAGACCTGAGTTGGTTATGAAGTCTATTGTCCCTGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv18s0001g13630.t01 (Vitis vinifera), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| || | | | || | | || || || | | ||| | | ||| | | || |||| || ||| || | |||| ||||||||||| ||||||||||||||||| || ||||| ||||| |||||||| |||||| | |||||||| || ||||| |||||||| ||||| ||
------------------------------------------------------------------------tctcagcaaccaaaccgaggttaatgtccgtccgtcttggg-----tttggatttggatctagggcttttcaaacgtggatctgattttttatt-tgggatct------cagGTATGGGAGCTGCATATGGAACCGCAAAGAGCGGGGTTGGTGTGGCCTCCATGGGTGTGATGAGACCGGAGCTTGTTATGAAGTCGATCGTTCCAGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv18s0001g02650.t01 (Vitis vinifera), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
| | | | | || | ||| | | | | |||||| | | | | || || ||| ||||| |||| |||||| |||||||||| || |||||||| || |||||||| || || || ||||| |||||||| |||||||| ||||||||||| ||||||||||| || ||||| ||
-------------------------------------------------------------------------tccgacgaaacaaagtg--ttgtattttcccacatcggaactgtttcctgtggaaacaaatggggcttttttcttggaatg------tttctaatgg---cttctttacagGCATGGGCGCGGCCTATGGGACTGCAAAGAGCGGGGTGGGTGTGGCCTCCATGGGAGTGATGCGACCGGAGCTCGTCATGAAATCGATTGTCCCAGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv03s0038g00790.t01 (Vitis vinifera), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccac--aatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
|| | || ||| ||||| | | |||| || | || || | |||| | | | || | | ||| ||| ||||||||||| |||||||| || |||||||| || |||||||| || ||||| |||||| |||||||||| |||||||| ||||| || ||||| ||
--------------------------------------------------------------------------------------attcgataatttcttctccttcttcttcattttctcaataaccggacatagatatatagatcttcgattctgattgactgttgtttttataatttttgagGTATGGGAGCTGCGTATGGAACGGCGAAGAGTGGCGTCGGAGTGGCGTCGATGGGAGTGATGAGGCCGGAGCTGGTGATGAAGTCGATTGTACCAGTTGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctt--tgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
|| ||| ||| | | | | || || || | | | | || | || | || || | ||| ||| | ||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||
----------------------------------------------------------------------------aagcagtgacgttgagggcctatcttgttgttttgaaggactttg-----atcagcttgctcgctctttaccgatat-----gttaacccgaggaggtttttgagcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCAGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
|| | || |||||| | | ||| | || || | | | ||| ||| | | ||| | | | | |||| ||||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
--------------------------------------------------------------------------ataacagc-gatgttgggc----accccactttcgagtgcctcatctaggatatggcctcgaaattcctagatatgaat-----aaaatggtgaaggtttttgcgcgcagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTACCAGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccc-cattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
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------------------------------------------------------------------------------------gtagcgtacaagattttcaccgtgcagtttaattttcttatttggagcgtgattttgaacttcctggactctgacaaagcggtggttggttttgatt-cagGCATGGGCGCTGCATATGGAACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCAGAGTTGGTGATGAAATCTATCGTGCCAGTAGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S200_79V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatgga--ttcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
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--------------------------------------------------------------------------cccgtgaacggtgttgggcacttaagcttcaatttcctcagctag------ggtgcgacttcgaaactcctggacatgaacta---aatgttgaatgttattgcgt---cagGCATGGGCGCTGCTTATGGGACAGCCAAGAGTGGAGTGGGAGTGGCATCCATGGGTGTGATGCGGCCCGAGCTGGTGATGAAGTCGATCGTGCCTGTGGT
upper sequence: EFJ14420 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 1
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
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--------------------------------------------------------------------gccaccactgtgtcactg-ttgggaaagtgagacgatgtgcagtg-aatcattttgt-acagttgtgaaaccgcgttccttga-------------ctacgatgttgttggcgcagGCATGGGCGCTGCCTATGGAACGGCCAAAAGTGGAGTTGGAGTGGCATCTATGGGTGTCATGCGACCTGAGCTAGTGATGAAGTCCATCGTCCCAGTGGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169051425|gb|FE457697.1|FE457697EST: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCA
EST:
gi|169051424|gb|FE457696.1|FE457696EST: CGGATTCATGGGCGCCGCGGCAGCTCTGGTCTTCTCGT GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCA
genomic: CGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCA
EST:
gi|70669212|gb|DN837789.1|DN837789EST: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGT GCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCA
genomic: GGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
35 (upstream exon),
34 (downstream exon)
Score:
85AGTCGGGGGAGATTCATGGCTTCCACCGACGCATTCAGTGGCGATGAGACGGCGCCCTTCTTCGGATTCATTGGCGCCGCGGCAGCTCTGGTCTTCTCGTgtaagttctt ... ttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
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atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
ttttctttgc CT-rich tract
attttcttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttcttgcctctcaccgccatggctggactggatctagggttgtggtgcgtgtctcggctgcgcggcattgcaatgcctgagcttgggccatggattcgccttcctgcgcgatttccttgccacaatcccgagatttcgatcccaaaattccccattttcttatggaattttctttgcagGCATGGGAGCTGCCTATGGAACCGCAAAGAGTGGTGTTGGAGTGGCATCCATGGGCGTGATGCGGCCGGAGCTCGTGATGAAATCGATCGTGCCAGTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT