1 5' 3' | 2 5' 3' | 3 5' 3' |
...tctacttcgtaaaaaatttccttctcagtgtcgttgttcttgcttttgccttggctttctttttgatgttctcaatcgttcttcttgtttgctggaacagGATGCCATGCAAAAACGAAGGCTTGCGAGCCGTGTTTTTGGATTCACGAGACACCACAAGCCTTACACCAATCTCAGCTTGACGCAGCCTCCACGCGACT
species | Selaginella moellendorffii |
transcript | EFJ12026 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
ttgccttggctttctttttgatgttctcaatcgttcttcttgtttgctggaacagGATGCCATGCAAAAACGAAGGCTTGCGAGCCGTGTTTTTGGATTCACGAGACACCACAAGCCTTACACCAATCTCAGCTTGACGCAGCCTCCACGCGACT
ttttgat putative branch site (score: 4)
ttcttcttgtttgct putative PPT
tttcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctacttcgtaaaaaatttccttctcagtgtcgttgttcttgcttttgccttggctttctttttgatgttctcaatcgttcttcttgtttgctggaacagGATGCCATGCAAAAACGAAGGCTTGCGAGCCGTGTTTTTGGATTCACGAGACACCACAAGCCTTACACCAATCTCAGCTTGACGCAGCCTCCACGCGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
tctactt
- - - - -taaaaaa
- - - - - - - - tttcctt
- - - - - - - - - - - - - - - - - tgttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttctt