1 5' 3' |
...gagcccaagaagaaagcttgcagctctctagtgaagcttaggatctgactttgcgcgtctttgagctgggaactgattggaagttcttttttctctccagATTGGTAACCGACAGGGAAACTGGCAAGCCAAAGGGCTATGGCTTTTGTGAGTTTAGGGACGAGGAGACCGCGCTAAGCGCTCGACGCAACCTCTCCGGC
species | Selaginella moellendorffii |
transcript | EFJ10810 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tgactttgcgcgtctttgagctgggaactgattggaagttcttttttctctccagATTGGTAACCGACAGGGAAACTGGCAAGCCAAAGGGCTATGGCTTTTGTGAGTTTAGGGACGAGGAGACCGCGCTAAGCGCTCGACGCAACCTCTCCGGC
aactgat putative branch site (score: 6)
ttcttttttctctcc putative PPT
ttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagcccaagaagaaagcttgcagctctctagtgaagcttaggatctgactttgcgcgtctttgagctgggaactgattggaagttcttttttctctccagATTGGTAACCGACAGGGAAACTGGCAAGCCAAAGGGCTATGGCTTTTGTGAGTTTAGGGACGAGGAGACCGCGCTAAGCGCTCGACGCAACCTCTCCGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - aagaaga
- - - - - - - - - -gcagctc
- - - - - - - - - - - - - - - - -aagctta
- - - - - - - - - - - - - - - - - - - - - - - - ctttgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg