1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgctttcaagtgttcttttctcctttctgttcctcaagacaagttcaacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACACAATTGAGTGGCTTGAAGGCTATTTGAAAAAGATCGAGGTGCCCATGG
species | Selaginella moellendorffii |
transcript | EFJ10635 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169036615|gb|FE444160.1|FE444160
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169027734|gb|FE433220.1|FE433220
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169027274|gb|FE436146.1|FE436146
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169061844|gb|FE470762.1|FE470762
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169056801|gb|FE465404.1|FE465404
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169052591|gb|FE461658.1|FE461658
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169078770|gb|FE489620.1|FE489620
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: CTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169116430|gb|FE518196.1|FE518196
genomic: CTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169075651|gb|FE482037.1|FE482037
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169115176|gb|FE515605.1|FE515605
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169105692|gb|FE508458.1|FE508458
genomic: ATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169027466|gb|FE432711.1|FE432711
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169028379|gb|FE439898.1|FE439898
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|70671002|gb|DN839579.1|DN839579
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169087543|gb|FE494634.1|FE494634
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACEST: gi|169082542|gb|FE489052.1|FE489052
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
EST: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAG GAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
genomic: ACAGTGGAGGGTGGCAAATGCGTATGTCACTGGGTAAGATCTTACTCCAGgtatgctttc ... caacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGAC
tgctttcaagtgttcttttctcctttctgttcctcaagacaagttcaacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACACAATTGAGTGGCTTGAAGGCTATTTGAAAAAGATCGAGGTGCCCATGG
cttcc CT-rich tract
ttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttcaagtgttcttttctcctttctgttcctcaagacaagttcaacttccagGAACCTGATCTCTTACTTCTGGACGAGCCGACGAATCATTTGGACATGGACACAATTGAGTGGCTTGAAGGCTATTTGAAAAAGATCGAGGTGCCCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG