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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgattcctttctttcattttgttcttttctttgccggctttgtcctgaagatctcccatttgccagGGCGATTCGTTGAATCTTTTGGGCTGTCTTCTTACTGGCGACCAGCTTGCGACTGAGACATTCACTGCGTATTACTTTATTTTTGCCGATGGTTTAATTA

Basic information

species Selaginella moellendorffii
transcript EFJ09806
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169111025|gb|FE509352.1|FE509352
EST:     GGCAGAGCGCCGATGCTCTCTCGCCTTGGTTTCTCTTCCAATGGCTTGCG                         GGCGATTCGTTGAATCTTTTGGGCTGTCTTCTTACTGGCGACCAGCTTGCG
genomic: GGCAGAGCGCCGATGCTCTCTCGCCTTGGTTTCTCTTCCAATGGCTTGCGgtacgattcc ... catttgccagGGCGATTCGTTGAATCTTTTGGGCTGTCTTCTTACTGGCGACCAGCTTGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcattttgttcttttctttgccggctttgtcctgaagatctcccatttgccagGGCGATTCGTTGAATCTTTTGGGCTGTCTTCTTACTGGCGACCAGCTTGCGACTGAGACATTCACTGCGTATTACTTTATTTTTGCCGATGGTTTAATTA
                                        tctcccattt  CT-rich tract
             ttttcttt  TA-rich tract