1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgtgcgctcgtttctcgccgtgtagctctagctcaatcagtgtttccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
species | Selaginella moellendorffii |
transcript | EFJ09763 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGGTAGGGTTCTTGAGCAGCAAGGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169022541|gb|FE429425.1|FE429425
genomic: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: GGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169020264|gb|FE430341.1|FE430341
genomic: GGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: GGGTTCGTGAGCAGCGAGGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAAGGAGGCAAGAAGAAAATEST: gi|169051171|gb|FE460252.1|FE460252
genomic: GGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: AGGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169097436|gb|FE499022.1|FE499022
genomic: AGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: AGGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169104851|gb|FE508722.1|FE508722
genomic: AGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: AGGTAGGGTTCTTGAGCAGCGAGGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169103249|gb|FE504821.1|FE504821
genomic: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169055047|gb|FE462962.1|FE462962
genomic: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: GAGCAGCGAGGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAAGGAGGCAAGAAGAAAATEST: gi|169065308|gb|FE473209.1|FE473209
genomic: GAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: TGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169103251|gb|FE505629.1|FE505629
genomic: TGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169033920|gb|FE441952.1|FE441952
genomic: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAATEST: gi|169069101|gb|FE476740.1|FE476740
genomic: AGGTAGGGTTCGTGAGCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
EST: GCAGCAAGGCGGCTGCGCTGCGCCATGGCCGTCGG GAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
genomic: GCAGCGAGGCGGCTGCGCTGTGCCATGGCCGTCGGgtacgtgcgc ... tccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
acgtgcgctcgtttctcgccgtgtagctctagctcaatcagtgtttccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
tgtttcctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgcgctcgtttctcgccgtgtagctctagctcaatcagtgtttccttggcagGAAGAACAAGCGGATTTCCAAGGGAAAGAAGGGAGGCAAGAAGAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA