1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtcggggtttcgcgcatagattaggtcaatttctcactcggcattgctttgcgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTTTAACGCTTTCGACATGTCGGCGATGACGAGCTTGTTGAAT
species | Selaginella moellendorffii |
transcript | EFJ08399 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169058746|gb|FE464784.1|FE464784
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169043618|gb|FE452686.1|FE452686
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169062456|gb|FE469515.1|FE469515
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169048081|gb|FE456796.1|FE456796
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169065055|gb|FE474503.1|FE474503
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169063746|gb|FE472476.1|FE472476
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169099405|gb|FE500488.1|FE500488
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169072467|gb|FE483863.1|FE483863
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169106627|gb|FE504649.1|FE504649
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169087066|gb|FE495158.1|FE495158
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169108040|gb|FE511022.1|FE511022
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTEST: gi|169023043|gb|FE431591.1|FE431591
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
EST: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAG AAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
genomic: CGAATTCGGGGATCGTCTCTATCGCGGCGCCATGGCGTCGGCTCCAGCAGgtcggggttt ... cgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATT
gtttcgcgcatagattaggtcaatttctcactcggcattgctttgcgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTTTAACGCTTTCGACATGTCGGCGATGACGAGCTTGTTGAAT
ttctcac putative branch site (score: 137)
atagatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggggtttcgcgcatagattaggtcaatttctcactcggcattgctttgcgattcgcagAAAAGGCCGCGGATGACAAGAAATCCGAGTCCTCCTCATCGCAGGCGGATTTTAACGCTTTCGACATGTCGGCGATGACGAGCTTGTTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT