Sequence
atgc intronic sequence ATGC exonic sequencegtgagctctcccttttcccccttttttgttactagacagagtgatcgtccgaagaagtcacataccaattgcgattttttttcttgctggttttgcaagGTATGCATTGACAAAGGCGTTCTGCGTCGCCTTTGCCTTGACGTTCTTTTCGATCTTCGACGTGCCGGTGTTTTGGCCCATCCTGCTGCTCTACTGGGTG
Basic information
species | Selaginella moellendorffii |
transcript | EFJ07768 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ07768 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: EDP03103 (Chlamydomonas reinhardtii), 3'ss of exon 2
--------------------------------------------------------------------------------------------------gtgagctctcccttttcccccttttttgtt--actagacagagtgatcgtccgaagaagtcacataccaattgcgattttttttcttgctggttttgcaagGTATGCATTGACAAAGGCGTTCTGCGTCGCCTTTGCCTTGACGTTCTTTTCGATCTTCGACGTGCCGGTGTTTTGGCCCATCCTGCTGCTCTACTGGGTG
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gtgcgtgtgaggacaggggcagggggcaggacacgcgcggcgcctgacacatgaaacgtggacgcctagcaggcatcggtagctagctcacatcacggctgcatcacacttgcaccacatgctttgtcgcactcgttttcctacgcggttgccgaaacccggccgcaccctccgctgttcaccgttctcgcttgcgcagGTACGCCTCGATCAAGTCCGTCTTGATCGGGACGGCCATGACCTTCTTTAGCGTGTTCGACGTGCCGGTGTTCTGGCCCATCCTGCTGCTGTACTGGTTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcgtccgaagaagtcacataccaattgcgattttttttcttgctggttttgcaagGTATGCATTGACAAAGGCGTTCTGCGTCGCCTTTGCCTTGACGTTCTTTTCGATCTTCGACGTGCCGGTGTTTTGGCCCATCCTGCTGCTCTACTGGGTG
attttttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagctctcccttttcccccttttttgttactagacagagtgatcgtccgaagaagtcacataccaattgcgattttttttcttgctggttttgcaagGTATGCATTGACAAAGGCGTTCTGCGTCGCCTTTGCCTTGACGTTCTTTTCGATCTTCGACGTGCCGGTGTTTTGGCCCATCCTGCTGCTCTACTGGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT